Atomistry » Chlorine » PDB 6bsd-6bza » 6bsg
Atomistry »
  Chlorine »
    PDB 6bsd-6bza »
      6bsg »

Chlorine in PDB 6bsg: Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in An Rna Hydrolysis-Off Mode

Protein crystallography data

The structure of Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in An Rna Hydrolysis-Off Mode, PDB code: 6bsg was solved by L.Tian, M.Kim, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.51 / 2.44
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 162.040, 162.040, 129.180, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 22.4

Other elements in 6bsg:

The structure of Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in An Rna Hydrolysis-Off Mode also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in An Rna Hydrolysis-Off Mode (pdb code 6bsg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in An Rna Hydrolysis-Off Mode, PDB code: 6bsg:

Chlorine binding site 1 out of 1 in 6bsg

Go back to Chlorine Binding Sites List in 6bsg
Chlorine binding site 1 out of 1 in the Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in An Rna Hydrolysis-Off Mode


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in An Rna Hydrolysis-Off Mode within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:63.4
occ:1.00
CL A:EFZ601 0.0 63.4 1.0
C4 A:EFZ601 1.7 54.3 1.0
C3 A:EFZ601 2.5 53.4 1.0
C5 A:EFZ601 2.6 55.7 1.0
CB A:LEU234 3.6 47.4 1.0
O A:HIS235 3.7 55.3 1.0
CG2 A:VAL106 3.8 61.3 1.0
CG1 A:VAL106 3.8 56.8 1.0
C2 A:EFZ601 3.8 56.2 1.0
C6 A:EFZ601 3.9 58.2 1.0
CD2 A:PHE227 3.9 55.0 1.0
O A:LEU234 3.9 56.6 1.0
CB A:VAL106 3.9 61.4 1.0
C A:HIS235 4.1 56.8 1.0
C A:LEU234 4.1 58.4 1.0
CE2 A:PHE227 4.4 54.2 1.0
OH A:TYR318 4.4 50.7 1.0
CA A:LEU234 4.5 46.8 1.0
N A:HIS235 4.5 52.9 1.0
N A:PRO236 4.5 61.8 1.0
CD1 A:LEU234 4.5 52.3 1.0
C1 A:EFZ601 4.6 50.2 1.0
CA A:HIS235 4.7 53.1 1.0
CA A:PRO236 4.7 58.7 1.0
CG A:LEU234 4.7 56.1 1.0
F3 A:EFZ601 4.9 66.5 1.0

Reference:

L.Tian, M.S.Kim, H.Li, J.Wang, W.Yang. Structure of Hiv-1 Reverse Transcriptase Cleaving Rna in An Rna/Dna Hybrid. Proc. Natl. Acad. Sci. V. 115 507 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29295939
DOI: 10.1073/PNAS.1719746115
Page generated: Sat Jul 12 12:05:19 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy