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Chlorine in PDB 6bv5: Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone

Enzymatic activity of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone

All present enzymatic activity of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone:
3.1.26.5;

Protein crystallography data

The structure of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone, PDB code: 6bv5 was solved by A.Karasik, N.Wu, C.A.Fierke, M.Koutmos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.08 / 1.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.616, 110.838, 140.743, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 22.3

Other elements in 6bv5:

The structure of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone (pdb code 6bv5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone, PDB code: 6bv5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6bv5

Go back to Chlorine Binding Sites List in 6bv5
Chlorine binding site 1 out of 2 in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl604

b:27.6
occ:1.00
HZ3 A:LYS451 2.5 27.2 1.0
HD3 A:LYS451 3.2 26.9 1.0
NZ A:LYS451 3.4 27.2 1.0
HE2 A:LYS451 3.6 26.8 1.0
CE A:LYS451 3.8 26.8 1.0
HZ2 A:LYS451 3.9 27.2 1.0
HZ1 A:LYS451 3.9 27.2 1.0
CD A:LYS451 3.9 26.9 1.0
HD2 A:LYS451 4.4 26.9 1.0
HE3 A:LYS451 4.8 26.8 1.0
HB3 A:LYS451 4.9 24.2 1.0
O A:HOH931 4.9 41.8 1.0

Chlorine binding site 2 out of 2 in 6bv5

Go back to Chlorine Binding Sites List in 6bv5
Chlorine binding site 2 out of 2 in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana After 45-Minute Soak with Juglone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:29.4
occ:1.00
HH12 A:ARG431 2.4 27.5 1.0
HH22 A:ARG431 2.6 26.2 1.0
O A:HOH911 3.1 28.7 1.0
NH1 A:ARG431 3.3 27.5 1.0
NH2 A:ARG431 3.4 26.2 1.0
CZ A:ARG431 3.8 26.8 1.0
HH11 A:ARG431 3.9 27.5 1.0
HH21 A:ARG431 4.1 26.2 1.0
O A:HOH891 4.5 38.9 1.0
O A:HOH925 4.5 49.7 1.0
O A:HOH764 4.6 27.9 1.0
OD1 A:ASP395 4.8 27.7 1.0

Reference:

N.Wu, A.Karasik, L.Muehlbauer, M.Koutmos, C.A.Fierke. Inhibition of Protein-Only Rnase P with Gambogic Acid and Juglone To Be Published.
Page generated: Sat Jul 12 12:07:14 2025

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