Chlorine in PDB 6bvf: Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra

The structure of Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra also contains other interesting chemical elements:

Fluorine

(F)

2 atoms

The binding sites of Chlorine atom in the Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra (pdb code 6bvf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra, PDB code: 6bvf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:72.8 occ:1.00 CL1 B:E9D201 0.0 72.8 1.0 C29 B:E9D201 1.8 72.8 1.0 C30 B:E9D201 2.7 72.8 1.0 C28 B:E9D201 2.8 72.8 1.0 H30 B:E9D201 2.8 72.8 1.0 OG B:SER106 3.1 69.5 1.0 C32 B:E9D201 3.2 72.8 1.0 C42 B:E9D201 3.3 72.8 1.0 C41 B:E9D201 3.3 72.8 1.0 O05 B:E9D201 3.5 72.8 1.0 C33 B:E9D201 3.5 72.8 1.0 CA B:SER106 3.6 69.5 1.0 N B:SER106 3.6 69.5 1.0 CG2 B:ILE105 3.7 68.3 1.0 O06 B:E9D201 3.7 72.8 1.0 CB B:SER106 3.9 69.5 1.0 C B:ILE105 3.9 68.3 1.0 C31 B:E9D201 4.0 72.8 1.0 C27 B:E9D201 4.0 72.8 1.0 O B:ILE105 4.1 68.3 1.0 N04 B:E9D201 4.1 72.8 1.0 NE1 B:TRP102 4.4 68.0 1.0 CB B:ILE105 4.4 68.3 1.0 C26 B:E9D201 4.5 72.8 1.0 C34 B:E9D201 4.6 72.8 1.0 CD1 B:TRP102 4.7 68.0 1.0 O B:TRP102 4.7 68.0 1.0 H27 B:E9D201 4.8 72.8 1.0 CA B:ILE105 4.8 68.3 1.0 C B:SER106 4.9 69.5 1.0 CD2 B:LEU140 5.0 69.1 1.0

Chlorine binding site 2 out of 2 in the Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl201 b:78.8 occ:1.00 CL1 C:E9D201 0.0 78.8 1.0 C29 C:E9D201 1.8 78.8 1.0 C30 C:E9D201 2.7 78.8 1.0 OG C:SER106 2.8 68.4 1.0 C28 C:E9D201 2.8 78.8 1.0 H30 C:E9D201 2.8 78.8 1.0 C32 C:E9D201 3.2 78.8 1.0 O06 C:E9D201 3.2 78.8 1.0 C41 C:E9D201 3.3 78.8 1.0 CA C:SER106 3.3 68.4 1.0 C33 C:E9D201 3.4 78.8 1.0 CB C:SER106 3.5 68.4 1.0 N C:SER106 3.6 68.4 1.0 O05 C:E9D201 3.8 78.8 1.0 NE1 C:TRP102 3.8 64.5 1.0 C42 C:E9D201 3.9 78.8 1.0 C31 C:E9D201 4.0 78.8 1.0 C27 C:E9D201 4.0 78.8 1.0 C C:ILE105 4.0 68.7 1.0 N04 C:E9D201 4.1 78.8 1.0 CG2 C:ILE105 4.1 68.7 1.0 O C:ILE105 4.1 68.7 1.0 CD1 C:TRP102 4.2 64.5 1.0 O C:TRP102 4.5 64.5 1.0 C34 C:E9D201 4.5 78.8 1.0 C26 C:E9D201 4.6 78.8 1.0 CE2 C:TRP102 4.7 64.5 1.0 C C:SER106 4.7 68.4 1.0 OG1 C:THR109 4.7 77.1 1.0 CB C:ILE105 4.8 68.7 1.0 H27 C:E9D201 4.8 78.8 1.0 CD1 C:LEU140 4.9 68.2 1.0 C35 C:E9D201 5.0 78.8 1.0

C.J.Schlicksup, J.C.Wang, S.Francis, B.Venkatakrishnan, W.W.Turner, M.Vannieuwenhze, A.Zlotnick. Hepatitis B Virus Core Protein Allosteric Modulators Can Distort and Disrupt Intact Capsids. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29377794
DOI: 10.7554/ELIFE.31473