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Chlorine in PDB 6bvn: Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra

Other elements in 6bvn:

The structure of Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra also contains other interesting chemical elements:

Fluorine (F) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra (pdb code 6bvn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra, PDB code: 6bvn:

Chlorine binding site 1 out of 1 in 6bvn

Go back to Chlorine Binding Sites List in 6bvn
Chlorine binding site 1 out of 1 in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:67.6
occ:1.00
CL1 B:E9D201 0.0 67.6 1.0
C29 B:E9D201 1.8 67.6 1.0
C30 B:E9D201 2.7 67.6 1.0
H30 B:E9D201 2.8 67.6 1.0
C28 B:E9D201 2.8 67.6 1.0
OG B:SER106 3.1 55.3 1.0
C41 B:E9D201 3.2 67.6 1.0
C32 B:E9D201 3.3 67.6 1.0
O05 B:E9D201 3.3 67.6 1.0
C42 B:E9D201 3.4 67.6 1.0
CG2 B:ILE105 3.5 53.7 1.0
C33 B:E9D201 3.5 67.6 1.0
O06 B:E9D201 3.5 67.6 1.0
N B:SER106 3.8 55.3 1.0
CB B:ILE105 4.0 53.7 1.0
C31 B:E9D201 4.0 67.6 1.0
CD1 B:TRP102 4.0 54.0 1.0
CA B:SER106 4.1 55.3 1.0
C27 B:E9D201 4.1 67.6 1.0
NE1 B:TRP102 4.1 54.0 1.0
CB B:SER106 4.1 55.3 1.0
C B:ILE105 4.3 53.7 1.0
N04 B:E9D201 4.3 67.6 1.0
O B:TRP102 4.5 54.0 1.0
C26 B:E9D201 4.6 67.6 1.0
C34 B:E9D201 4.6 67.6 1.0
CA B:ILE105 4.8 53.7 1.0
O B:ILE105 4.8 53.7 1.0
H27 B:E9D201 4.8 67.6 1.0
CD2 B:LEU30 5.0 62.6 1.0
CG B:TRP102 5.0 54.0 1.0

Reference:

C.J.Schlicksup, J.C.Wang, S.Francis, B.Venkatakrishnan, W.W.Turner, M.Vannieuwenhze, A.Zlotnick. Hepatitis B Virus Core Protein Allosteric Modulators Can Distort and Disrupt Intact Capsids. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29377794
DOI: 10.7554/ELIFE.31473
Page generated: Sat Jul 12 12:08:23 2025

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