Chlorine in PDB 6c30: Mycobacterium Smegmatis Rimj (Apo Form)

The structure of Mycobacterium Smegmatis Rimj (Apo Form), PDB code: 6c30 was solved by L.Favrot, S.S.Hegde, J.S.Blanchard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.21 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.414, 79.408, 116.156, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 19.5

The binding sites of Chlorine atom in the Mycobacterium Smegmatis Rimj (Apo Form) (pdb code 6c30). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Mycobacterium Smegmatis Rimj (Apo Form), PDB code: 6c30:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Mycobacterium Smegmatis Rimj (Apo Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mycobacterium Smegmatis Rimj (Apo Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:26.5 occ:1.00 O A:HOH641 3.1 21.5 1.0 N A:GLY121 3.3 20.9 1.0 N A:ALA123 3.4 13.7 1.0 CA A:GLY121 3.4 18.8 1.0 N A:THR124 3.4 14.6 1.0 C A:GLY121 3.6 14.9 1.0 N A:ILE122 3.6 16.2 1.0 CB A:ALA123 3.7 14.0 1.0 CG2 A:THR124 3.8 16.6 1.0 OG1 A:THR124 3.9 17.3 1.0 CA A:ALA123 3.9 14.1 1.0 O A:HOH423 3.9 26.3 1.0 C A:ALA123 4.1 14.5 1.0 CG2 A:VAL157 4.2 18.0 1.0 CB A:THR124 4.3 15.5 1.0 C A:ILE122 4.3 13.6 1.0 O A:GLY121 4.3 16.9 1.0 N A:GLY120 4.4 28.8 1.0 CA A:THR124 4.4 15.3 1.0 CA A:ILE122 4.6 15.2 1.0 C A:GLY120 4.6 24.9 1.0 N A:GLY119 4.7 29.0 1.0 CA A:GLY119 4.9 34.7 1.0 CG1 A:VAL157 4.9 16.4 1.0 O A:HOH682 4.9 31.6 1.0

Chlorine binding site 2 out of 3 in the Mycobacterium Smegmatis Rimj (Apo Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mycobacterium Smegmatis Rimj (Apo Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:19.1 occ:1.00 NE1 A:TRP208 3.2 17.0 1.0 CZ2 A:TRP208 3.6 16.6 1.0 CE2 A:TRP208 3.7 15.2 1.0 CG1 A:VAL18 3.9 16.0 1.0 C1 A:GOL303 4.1 33.4 1.0 CD1 A:TRP208 4.4 17.9 1.0 CG A:PRO11 4.5 21.1 1.0 CG2 A:VAL18 4.5 17.2 1.0 O1 A:GOL303 4.7 21.3 1.0 CB A:VAL18 4.7 13.4 1.0 CB A:PRO11 4.7 18.6 1.0 C2 A:GOL303 4.8 24.8 1.0 CH2 A:TRP208 4.9 17.2 1.0

Chlorine binding site 3 out of 3 in the Mycobacterium Smegmatis Rimj (Apo Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Mycobacterium Smegmatis Rimj (Apo Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl306 b:18.1 occ:1.00 O A:HOH409 3.0 16.8 1.0 O A:HOH716 3.0 27.4 1.0 NH1 A:ARG25 3.4 14.7 1.0 CB A:ARG22 3.8 13.5 1.0 CD A:PRO23 4.0 12.7 1.0 CD A:ARG22 4.0 11.9 1.0 CG A:ARG22 4.2 12.5 1.0 C2 A:GOL301 4.4 20.2 0.6 O3 A:GOL301 4.5 16.1 0.4 O A:HOH425 4.5 19.8 1.0 N A:PRO23 4.6 12.2 1.0 CG2 A:THR8 4.7 19.4 1.0 C3 A:GOL301 4.7 20.6 0.4 CZ A:ARG25 4.8 13.7 1.0 CG A:PRO23 4.9 13.2 1.0 C2 A:GOL301 4.9 18.1 0.4 O A:PRO23 4.9 11.1 1.0 C3 A:GOL301 4.9 17.4 0.6 O2 A:GOL301 4.9 19.7 0.6 CA A:ARG22 4.9 12.9 1.0 NE A:ARG22 5.0 12.7 1.0

L.Favrot, S.S.Hegde, J.S.Blanchard. Structural Characterization of Mycobacterium Smegmatis Rimj, An N-Acetyltransferase Protein To Be Published.