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Chlorine in PDB 6cbl: X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Neamine As An External Aldimine

Enzymatic activity of X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Neamine As An External Aldimine

All present enzymatic activity of X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Neamine As An External Aldimine:
2.6.1.93; 2.6.1.95;

Protein crystallography data

The structure of X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Neamine As An External Aldimine, PDB code: 6cbl was solved by J.B.Thoden, G.T.Dow, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 70.363, 107.363, 217.528, 90.00, 98.24, 90.00
R / Rfree (%) 19.6 / 24.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Neamine As An External Aldimine (pdb code 6cbl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Neamine As An External Aldimine, PDB code: 6cbl:

Chlorine binding site 1 out of 1 in 6cbl

Go back to Chlorine Binding Sites List in 6cbl
Chlorine binding site 1 out of 1 in the X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Neamine As An External Aldimine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Neob From Streptomyces Fradiae in Complex with Neamine As An External Aldimine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:21.6
occ:1.00
 O A:HOH929 3.0 27.8 1.0
O A:HOH854 3.0 25.1 1.0
N A:LEU157 3.2 13.4 1.0
O A:HOH841 3.3 26.4 1.0
NE1 A:TRP186 3.3 13.8 1.0
O A:PHE155 3.5 12.2 1.0
O A:HOH741 3.7 14.7 1.0
CD1 A:TRP186 3.7 13.0 1.0
CG A:LEU157 3.8 17.6 1.0
CB A:LEU157 3.8 15.4 1.0
CA A:ASP156 3.9 11.3 1.0
C A:ASP156 4.0 12.5 1.0
CA A:LEU157 4.1 14.4 1.0
NH1 A:ARG401 4.2 14.5 1.0
CD1 A:LEU157 4.2 20.0 1.0
C A:PHE155 4.5 11.0 1.0
CE2 A:TRP186 4.6 12.5 1.0
OD1 A:ASP156 4.6 17.9 1.0
N A:ASP156 4.7 12.0 1.0
CG A:ASP156 4.7 15.5 1.0
O A:HOH786 4.9 27.9 1.0
O A:HOH907 4.9 31.6 1.0
CB A:ASP156 4.9 13.4 1.0
N A:GLY158 4.9 18.1 1.0

Reference:

G.T.Dow, J.B.Thoden, H.M.Holden. The Three-Dimensional Structure of Neob: An Aminotransferase Involved in the Biosynthesis of Neomycin. Protein Sci. V. 27 945 2018.
ISSN: ESSN 1469-896X
PubMed: 29516565
DOI: 10.1002/PRO.3400
Page generated: Fri Jul 26 23:24:51 2024

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