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Chlorine in PDB 6dic: D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
Enzymatic activity of D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
All present enzymatic activity of D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog, PDB code: 6dic
was solved by
B.D.Freudenthal,
M.R.Smith,
S.H.Wilson,
W.A.Beard,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.66 / 1.99 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 50.800, 80.400, 55.500, 90.00, 107.90, 90.00 |
| R / Rfree (%) | 17.5 / 23.2 |
Other elements in 6dic:
The structure of D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog also contains other interesting chemical elements:
| Calcium | (Ca) | 3 atoms |
| Sodium | (Na) | 4 atoms |
Chlorine Binding Sites:
The binding sites of Chlorine atom in the D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
(pdb code 6dic). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog, PDB code: 6dic:
Jump to Chlorine binding site number: 1; 2; 3;
In total 3 binding sites of Chlorine where determined in the D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog, PDB code: 6dic:
Jump to Chlorine binding site number: 1; 2; 3;
Chlorine binding site 1 out of 3 in 6dic
Go back to
Chlorine Binding Sites List in 6dic
Chlorine binding site 1 out
of 3 in the D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog within 5.0Å range:
|
Chlorine binding site 2 out of 3 in 6dic
Go back to
Chlorine Binding Sites List in 6dic
Chlorine binding site 2 out
of 3 in the D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog within 5.0Å range:
|
Chlorine binding site 3 out of 3 in 6dic
Go back to
Chlorine Binding Sites List in 6dic
Chlorine binding site 3 out
of 3 in the D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of D276G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming Fapy-Dgtp Analog within 5.0Å range:
|
Reference:
M.R.Smith,
D.D.Shock,
W.A.Beard,
M.M.Greenberg,
B.D.Freudenthal,
S.H.Wilson.
A Guardian Residue Hinders Insertion of A Fapy•Dgtp Analog By Modulating the Open-Closed Dna Polymerase Transition. Nucleic Acids Res. V. 47 3197 2019.
ISSN: ESSN 1362-4962
PubMed: 30649431
DOI: 10.1093/NAR/GKZ002
Page generated: Sat Jul 12 12:49:53 2025
ISSN: ESSN 1362-4962
PubMed: 30649431
DOI: 10.1093/NAR/GKZ002
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