Chlorine in PDB 6dm1: Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction

The binding sites of Chlorine atom in the Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction (pdb code 6dm1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction, PDB code: 6dm1:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1302 b:0.6 occ:1.00 CL A:CYZ1302 0.0 0.6 1.0 C13 A:CYZ1302 1.8 0.6 1.0 C14 A:CYZ1302 2.8 0.6 1.0 C12 A:CYZ1302 2.8 0.6 1.0 OD1 A:ASP760 3.1 0.1 1.0 O4 A:CYZ1302 3.1 0.6 1.0 S2 A:CYZ1302 3.2 0.6 1.0 N3 A:CYZ1302 3.6 0.6 1.0 C11 A:CYZ1302 4.0 0.6 1.0 C10 A:CYZ1302 4.1 0.6 1.0 CG A:ASP760 4.1 0.1 1.0 OG D:SER729 4.1 0.2 1.0 O A:PHE495 4.3 0.0 1.0 CB D:SER729 4.3 0.2 1.0 CB A:LEU759 4.5 0.5 1.0 OD2 A:ASP760 4.5 0.1 1.0 C9 A:CYZ1302 4.5 0.6 1.0 O3 A:CYZ1302 4.7 0.6 1.0 N A:ASP760 4.9 0.1 1.0

Chlorine binding site 2 out of 4 in the Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1302 b:0.9 occ:1.00 CL B:CYZ1302 0.0 0.9 1.0 C13 B:CYZ1302 1.8 0.9 1.0 C14 B:CYZ1302 2.8 0.9 1.0 C12 B:CYZ1302 2.8 0.9 1.0 OD1 B:ASP760 3.1 0.4 1.0 O4 B:CYZ1302 3.1 0.9 1.0 S2 B:CYZ1302 3.2 0.9 1.0 N3 B:CYZ1302 3.5 0.9 1.0 CB B:LEU759 3.8 0.4 1.0 C11 B:CYZ1302 4.0 0.9 1.0 CG B:ASP760 4.1 0.4 1.0 C10 B:CYZ1302 4.1 0.9 1.0 N B:ASP760 4.2 0.4 1.0 C B:LEU759 4.3 0.4 1.0 OG C:SER729 4.4 0.2 1.0 C9 B:CYZ1302 4.5 0.9 1.0 CD1 B:LEU759 4.6 0.4 1.0 CA B:ASP760 4.6 0.4 1.0 OD2 B:ASP760 4.7 0.4 1.0 O B:LEU759 4.7 0.4 1.0 O B:PHE495 4.7 0.6 1.0 O3 B:CYZ1302 4.7 0.9 1.0 CA B:LEU759 4.7 0.4 1.0 CB C:SER729 4.7 0.2 1.0 CG B:LEU759 4.8 0.4 1.0 CB B:ASP760 5.0 0.4 1.0

Chlorine binding site 3 out of 4 in the Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1302 b:0.2 occ:1.00 CL C:CYZ1302 0.0 0.2 1.0 C13 C:CYZ1302 1.8 0.2 1.0 C14 C:CYZ1302 2.8 0.2 1.0 C12 C:CYZ1302 2.8 0.2 1.0 OD1 C:ASP760 3.1 0.4 1.0 O4 C:CYZ1302 3.1 0.2 1.0 S2 C:CYZ1302 3.2 0.2 1.0 N3 C:CYZ1302 3.6 0.2 1.0 C11 C:CYZ1302 4.0 0.2 1.0 C10 C:CYZ1302 4.1 0.2 1.0 CG C:ASP760 4.1 0.4 1.0 OG B:SER729 4.1 0.5 1.0 O C:PHE495 4.3 0.8 1.0 CB B:SER729 4.3 0.5 1.0 CB C:LEU759 4.5 0.1 1.0 OD2 C:ASP760 4.5 0.4 1.0 C9 C:CYZ1302 4.5 0.2 1.0 O3 C:CYZ1302 4.7 0.2 1.0 N C:ASP760 4.9 0.4 1.0

Chlorine binding site 4 out of 4 in the Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Open State GLUA2 in Complex with Stz and Blocked By Naspm, After Micelle Signal Subtraction within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl1302 b:0.3 occ:1.00 CL D:CYZ1302 0.0 0.3 1.0 C13 D:CYZ1302 1.8 0.3 1.0 C14 D:CYZ1302 2.8 0.3 1.0 C12 D:CYZ1302 2.8 0.3 1.0 OD1 D:ASP760 3.1 0.6 1.0 O4 D:CYZ1302 3.1 0.3 1.0 S2 D:CYZ1302 3.2 0.3 1.0 N3 D:CYZ1302 3.5 0.3 1.0 CB D:LEU759 3.8 0.5 1.0 C11 D:CYZ1302 4.0 0.3 1.0 CG D:ASP760 4.0 0.6 1.0 C10 D:CYZ1302 4.1 0.3 1.0 N D:ASP760 4.2 0.6 1.0 C D:LEU759 4.3 0.5 1.0 OG A:SER729 4.4 0.1 1.0 C9 D:CYZ1302 4.5 0.3 1.0 CD1 D:LEU759 4.6 0.5 1.0 CA D:ASP760 4.6 0.6 1.0 OD2 D:ASP760 4.6 0.6 1.0 O D:PHE495 4.7 0.7 1.0 O D:LEU759 4.7 0.5 1.0 O3 D:CYZ1302 4.7 0.3 1.0 CA D:LEU759 4.7 0.5 1.0 CB A:SER729 4.7 0.1 1.0 CG D:LEU759 4.8 0.5 1.0 CB D:ASP760 5.0 0.6 1.0

E.C.Twomey, M.V.Yelshanskaya, A.A.Vassilevski, A.I.Sobolevsky. Mechanisms of Channel Block in Calcium-Permeable Ampa Receptors. Neuron V. 99 956 2018.
ISSN: ISSN 1097-4199
PubMed: 30122377
DOI: 10.1016/J.NEURON.2018.07.027