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Chlorine in PDB 6ds6: Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide

Enzymatic activity of Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide

All present enzymatic activity of Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide:
2.3.1.48;

Protein crystallography data

The structure of Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide, PDB code: 6ds6 was solved by Y.Zhang, T.G.Kutateladze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.32 / 1.95
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 44.026, 44.026, 85.904, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 25.3

Other elements in 6ds6:

The structure of Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide (pdb code 6ds6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide, PDB code: 6ds6:

Chlorine binding site 1 out of 1 in 6ds6

Go back to Chlorine Binding Sites List in 6ds6
Chlorine binding site 1 out of 1 in the Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of P300 Zz Domain in Complex with Histone H3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl5003

b:65.7
occ:1.00
 O A:HOH5141 2.3 53.9 1.0
NE1 A:TRP25 3.5 32.9 1.0
NZ A:LYS51 3.5 58.1 1.0
CG2 A:ILE37 3.6 54.3 1.0
OD1 A:ASN41 3.7 66.9 1.0
CZ2 A:TRP25 4.1 36.5 1.0
CE2 A:TRP25 4.2 37.4 1.0
CD1 A:ILE37 4.2 53.6 1.0
CE A:LYS51 4.2 53.8 1.0
O A:HOH5131 4.3 64.4 1.0
ND2 A:ASN41 4.4 53.8 1.0
CD A:LYS51 4.4 42.2 1.0
CG A:ASN41 4.5 57.4 1.0
CG1 A:ILE37 4.7 51.0 1.0
CD2 A:TYR40 4.7 39.5 1.0
CB A:ILE37 4.7 46.4 1.0
CD1 A:TRP25 4.7 38.0 1.0

Reference:

Y.Zhang, Y.Xue, J.Shi, J.Ahn, W.Mi, M.Ali, X.Wang, B.J.Klein, H.Wen, W.Li, X.Shi, T.G.Kutateladze. The Zz Domain of P300 Mediates Specificity of the Adjacent Hat Domain For Histone H3. Nat. Struct. Mol. Biol. V. 25 841 2018.
ISSN: ESSN 1545-9985
PubMed: 30150647
DOI: 10.1038/S41594-018-0114-9
Page generated: Sat Jul 27 21:48:05 2024

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