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Chlorine in PDB 6dya: WDR5 in Complex with A Win Site Inhibitor

Protein crystallography data

The structure of WDR5 in Complex with A Win Site Inhibitor, PDB code: 6dya was solved by J.Phan, F.Wang, S.W.Fesik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.40 / 2.56
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.909, 86.793, 41.985, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 23

Chlorine Binding Sites:

The binding sites of Chlorine atom in the WDR5 in Complex with A Win Site Inhibitor (pdb code 6dya). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the WDR5 in Complex with A Win Site Inhibitor, PDB code: 6dya:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6dya

Go back to Chlorine Binding Sites List in 6dya
Chlorine binding site 1 out of 2 in the WDR5 in Complex with A Win Site Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of WDR5 in Complex with A Win Site Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:76.3
occ:1.00
CL2 A:HHM401 0.0 76.3 1.0
C21 A:HHM401 1.8 55.7 1.0
C22 A:HHM401 2.9 55.4 1.0
C20 A:HHM401 2.9 55.7 1.0
C11 A:HHM401 4.3 54.0 1.0
C19 A:HHM401 4.3 55.2 1.0
CE2 A:PHE149 4.4 40.5 1.0
CE2 A:TYR191 4.5 61.2 1.0
CD2 A:TYR191 4.7 60.1 1.0
CG A:PRO173 4.8 48.3 1.0
C18 A:HHM401 4.8 54.9 1.0
CZ A:PHE149 4.9 39.9 1.0
CZ A:TYR191 4.9 60.8 1.0

Chlorine binding site 2 out of 2 in 6dya

Go back to Chlorine Binding Sites List in 6dya
Chlorine binding site 2 out of 2 in the WDR5 in Complex with A Win Site Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of WDR5 in Complex with A Win Site Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:55.6
occ:1.00
CL1 A:HHM401 0.0 55.6 1.0
C19 A:HHM401 1.8 55.2 1.0
C20 A:HHM401 2.9 55.7 1.0
C18 A:HHM401 2.9 54.9 1.0
CE2 A:PHE133 3.7 38.7 1.0
CE1 A:TYR191 3.7 59.0 1.0
O A:VAL174 3.7 42.7 1.0
CD2 A:PHE133 3.8 37.1 1.0
CE1 A:PHE149 3.9 39.1 1.0
CZ A:PHE149 4.0 39.9 1.0
SG A:CYS261 4.0 42.1 1.0
CZ A:PHE133 4.1 38.8 1.0
CB A:PRO173 4.1 47.2 1.0
CD1 A:TYR191 4.2 58.0 1.0
CG A:PHE133 4.2 36.5 1.0
C11 A:HHM401 4.3 54.0 1.0
C21 A:HHM401 4.3 55.7 1.0
CA A:SER175 4.3 39.8 1.0
C A:VAL174 4.4 42.0 1.0
CB A:SER175 4.4 40.5 1.0
CE1 A:PHE133 4.5 37.1 1.0
CZ A:TYR191 4.5 60.8 1.0
CD1 A:PHE133 4.6 36.3 1.0
N A:SER175 4.7 40.5 1.0
CD1 A:PHE149 4.7 38.6 1.0
OH A:TYR191 4.7 62.9 1.0
C A:PRO173 4.8 46.0 1.0
O A:PRO173 4.8 45.6 1.0
C22 A:HHM401 4.8 55.4 1.0
CE2 A:PHE149 4.9 40.5 1.0
CB A:PHE133 5.0 35.9 1.0

Reference:

E.R.Aho, J.Wang, R.D.Gogliotti, G.C.Howard, J.Phan, P.Acharya, J.D.Macdonald, K.Cheng, S.L.Lorey, B.Lu, S.Wenzel, A.M.Foshage, J.Alvarado, F.Wang, J.G.Shaw, B.Zhao, A.M.Weissmiller, L.R.Thomas, C.R.Vakoc, M.D.Hall, S.W.Hiebert, Q.Liu, S.R.Stauffer, S.W.Fesik, W.P.Tansey. Displacement of WDR5 From Chromatin By A Win Site Inhibitor with Picomolar Affinity. Cell Rep V. 26 2916 2019.
ISSN: ESSN 2211-1247
PubMed: 30865883
DOI: 10.1016/J.CELREP.2019.02.047
Page generated: Sat Jul 12 13:08:53 2025

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