Atomistry » Chlorine » PDB 6dy2-6e77 » 6dz4
Atomistry »
  Chlorine »
    PDB 6dy2-6e77 »
      6dz4 »

Chlorine in PDB 6dz4: Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.

Enzymatic activity of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.

All present enzymatic activity of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.:
4.2.1.20;

Protein crystallography data

The structure of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site., PDB code: 6dz4 was solved by E.Hilario, M.F.Dunn, L.J.Mueller, L.Fan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.94 / 1.45
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 182.509, 59.300, 67.325, 90.00, 94.69, 90.00
R / Rfree (%) 14.7 / 18.6

Other elements in 6dz4:

The structure of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. (pdb code 6dz4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site., PDB code: 6dz4:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 6dz4

Go back to Chlorine Binding Sites List in 6dz4
Chlorine binding site 1 out of 8 in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:41.9
occ:1.00
 O A:HOH592 2.3 44.6 1.0
N A:ILE95 3.1 19.1 1.0
OG1 A:THR94 3.2 27.5 1.0
N A:THR94 3.2 20.7 1.0
C A:HIS92 3.6 19.6 1.0
CB A:HIS92 3.6 19.5 1.0
CB A:ILE95 3.7 19.7 1.0
N A:PRO93 3.7 20.6 1.0
CA A:HIS92 3.7 19.4 1.0
CG2 A:ILE95 3.8 18.9 1.0
O A:HOH467 3.8 42.3 1.0
CA A:THR94 3.8 21.4 1.0
C A:THR94 3.9 19.5 1.0
CD A:PRO93 3.9 21.8 1.0
CA A:ILE95 3.9 19.5 1.0
O A:HIS92 4.0 20.4 1.0
CB A:THR94 4.1 22.9 1.0
O A:HOH583 4.2 42.5 1.0
C A:PRO93 4.3 21.3 1.0
O A:HOH437 4.5 43.6 1.0
CA A:PRO93 4.5 21.4 1.0
CG A:PRO93 4.6 22.8 1.0
CG A:HIS92 4.6 20.2 1.0
ND1 A:HIS92 4.6 21.6 1.0
CG2 A:THR94 4.9 24.7 1.0
O A:THR94 5.0 21.6 1.0

Chlorine binding site 2 out of 8 in 6dz4

Go back to Chlorine Binding Sites List in 6dz4
Chlorine binding site 2 out of 8 in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:56.2
occ:1.00
 NH1 A:ARG225 3.4 38.1 1.0
CD A:ARG225 4.1 40.8 1.0
O A:SER221 4.5 26.5 0.5
CZ A:ARG225 4.5 40.7 1.0
O A:SER221 4.5 27.2 0.6
CB A:ARG225 4.6 33.0 1.0
CG A:ARG225 4.6 36.7 1.0
NE A:ARG225 4.7 42.9 1.0
CB A:SER221 4.7 24.5 0.6
CB A:SER221 4.8 24.1 0.5

Chlorine binding site 3 out of 8 in 6dz4

Go back to Chlorine Binding Sites List in 6dz4
Chlorine binding site 3 out of 8 in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:61.9
occ:1.00
 O B:ARG150 3.9 22.7 1.0
C B:ARG150 4.1 21.8 1.0
CA B:LEU151 4.2 20.0 1.0
N B:LEU151 4.2 19.9 1.0
CD2 B:LEU151 4.4 20.6 1.0
CE1 B:PHE147 4.5 29.2 1.0
CB B:ARG150 4.5 25.0 1.0
CG B:LEU151 4.8 21.0 1.0
CA B:ARG150 4.9 21.6 1.0

Chlorine binding site 4 out of 8 in 6dz4

Go back to Chlorine Binding Sites List in 6dz4
Chlorine binding site 4 out of 8 in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:62.7
occ:1.00
 C B:GLU220 3.6 15.8 1.0
O B:LYS219 3.7 18.9 1.0
N B:GLY221 3.7 16.1 1.0
O B:HOH814 3.7 58.2 1.0
O B:GLU220 3.9 18.5 1.0
C B:LYS219 4.0 16.1 1.0
CA B:GLU220 4.0 15.2 1.0
CA B:GLY221 4.1 17.7 1.0
O B:HOH934 4.1 49.0 1.0
N B:GLU220 4.1 15.2 1.0
O B:ASP218 4.2 18.2 1.0
O B:HOH744 4.7 49.1 1.0
O B:LEU217 4.9 18.0 1.0

Chlorine binding site 5 out of 8 in 6dz4

Go back to Chlorine Binding Sites List in 6dz4
Chlorine binding site 5 out of 8 in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:57.0
occ:1.00
 O B:HOH671 3.3 31.9 1.0
O B:GLY274 3.5 20.3 1.0
O B:HOH762 3.7 18.5 0.5
O B:HOH762 4.0 15.6 0.5
O B:LEU271 4.1 15.2 1.0
C B:GLY274 4.1 18.8 1.0
CA B:ARG275 4.1 17.4 0.7
CA B:ARG275 4.1 17.6 0.3
N B:VAL276 4.2 15.7 1.0
CG2 B:VAL276 4.4 19.8 1.0
N B:ARG275 4.4 18.4 0.3
N B:ARG275 4.4 18.3 0.7
C B:ARG275 4.5 15.8 0.7
O B:PRO270 4.5 13.1 1.0
C B:ARG275 4.5 16.2 0.3
CB B:PRO285 4.7 13.5 1.0
O B:HOH951 4.7 31.1 1.0
CG B:PRO285 4.8 13.1 1.0

Chlorine binding site 6 out of 8 in 6dz4

Go back to Chlorine Binding Sites List in 6dz4
Chlorine binding site 6 out of 8 in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl406

b:0.8
occ:1.00
 O B:HOH756 2.9 41.9 1.0
O B:HOH691 5.0 48.9 1.0

Chlorine binding site 7 out of 8 in 6dz4

Go back to Chlorine Binding Sites List in 6dz4
Chlorine binding site 7 out of 8 in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl407

b:66.1
occ:1.00
 O B:HOH888 4.1 39.4 1.0
O B:HOH972 4.7 34.8 1.0
O B:HOH909 4.7 47.4 1.0
O B:HOH861 4.8 19.2 1.0
O B:HOH900 4.8 25.3 1.0
O B:HOH531 4.8 22.3 1.0
O B:HOH966 4.8 27.4 1.0
O B:HOH920 4.9 56.4 1.0
O B:HOH941 5.0 23.2 1.0

Chlorine binding site 8 out of 8 in 6dz4

Go back to Chlorine Binding Sites List in 6dz4
Chlorine binding site 8 out of 8 in the Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl408

b:50.9
occ:1.00
 NZ B:LYS283 2.7 24.4 1.0
O A:HOH442 3.5 25.5 1.0
CG A:PRO138 3.5 17.2 1.0
CD1 A:ILE111 3.7 16.7 1.0
CE B:LYS283 3.7 19.0 1.0
O B:HOH899 3.8 41.3 1.0
OH B:TYR16 4.0 17.9 1.0
O B:HOH957 4.0 34.4 1.0
CB A:PRO138 4.2 16.0 1.0
CE1 A:PHE139 4.4 14.4 1.0
O B:HOH594 4.5 43.9 1.0
CE1 A:PHE107 4.5 19.1 1.0
CD1 A:PHE107 4.5 16.7 1.0
CZ A:PHE139 4.7 13.8 1.0
CD A:PRO138 4.8 15.1 1.0
CD1 B:ILE278 4.8 14.9 1.0

Reference:

E.Hilario, M.F.Dunn, L.J.Mueller, L.Fan. Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4-Ylmethyl] -Serine (Pls) at the Beta-Site. To Be Published.
Page generated: Sat Jul 12 13:09:43 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy