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Chlorine in PDB 6ebc: Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt

Protein crystallography data

The structure of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt, PDB code: 6ebc was solved by R.M.Domingos, R.D.Teixeira, T.G.P.Alegria, P.S.Vieira, M.T.Murakami, L.E.S.Netto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 1.87
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 88.160, 88.160, 169.916, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 21.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt (pdb code 6ebc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt, PDB code: 6ebc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 6ebc

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Chlorine binding site 1 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:39.8
occ:1.00
 N A:SER77 3.1 38.9 1.0
C A:LEU105 3.3 42.4 1.0
N A:GLY107 3.4 45.5 1.0
CB A:SER77 3.4 38.6 1.0
CA A:LEU105 3.4 40.7 1.0
OG A:SER77 3.6 41.6 1.0
N A:PRO106 3.6 43.4 1.0
CD A:PRO106 3.7 41.1 1.0
CA A:SER77 3.8 38.8 1.0
CB A:LEU105 3.9 41.3 1.0
O A:LEU105 3.9 43.8 1.0
CA A:GLY107 4.0 47.6 1.0
C A:LEU76 4.0 41.1 1.0
CA A:LEU76 4.0 42.4 1.0
CG A:LEU108 4.1 48.4 1.0
CB A:ALA80 4.3 32.5 1.0
CD2 A:LEU105 4.3 39.3 1.0
N A:LEU108 4.3 48.1 1.0
CB A:LEU76 4.4 41.4 1.0
C A:PRO106 4.4 47.6 1.0
C A:GLY107 4.5 49.4 1.0
CD2 A:LEU76 4.5 45.5 1.0
CD1 A:LEU108 4.5 47.8 1.0
CG A:PRO106 4.6 43.6 1.0
CA A:PRO106 4.6 45.3 1.0
O A:SER77 4.7 33.3 1.0
CG A:LEU105 4.7 39.7 1.0
C A:SER77 4.8 35.3 1.0
N A:LEU105 4.8 38.1 1.0
CA A:ALA80 4.9 33.1 1.0
CD2 A:LEU108 4.9 52.2 1.0
CB A:LEU108 4.9 49.5 1.0

Chlorine binding site 2 out of 7 in 6ebc

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Chlorine binding site 2 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:43.2
occ:1.00
 OG A:SER25 2.6 39.4 1.0
OG1 A:THR10 2.8 33.5 1.0
N A:ASP26 3.3 31.1 1.0
O A:HOH303 3.4 33.6 1.0
N A:GLN11 3.5 32.5 1.0
N A:SER25 3.6 30.8 1.0
CG A:ASP26 3.6 31.1 1.0
CB A:ASP26 3.7 32.0 1.0
O A:GLN11 3.7 30.2 1.0
CB A:THR10 3.7 32.4 1.0
CA A:THR10 3.8 34.1 1.0
NE2 C:GLN51 3.8 27.1 1.0
CB A:SER25 3.9 36.0 1.0
OD2 A:ASP26 3.9 31.3 1.0
OD1 A:ASP26 3.9 29.0 1.0
C A:SER25 4.0 32.2 1.0
CA A:SER25 4.0 33.5 1.0
CA A:ASP26 4.1 32.4 1.0
C A:THR10 4.2 33.2 1.0
CB A:SER24 4.4 26.8 1.0
C A:SER24 4.5 29.4 1.0
CA A:GLN11 4.6 33.6 1.0
C A:GLN11 4.6 31.1 1.0
CA A:SER24 4.8 28.2 1.0
CD C:GLN51 4.9 28.2 1.0
OG A:SER24 4.9 26.2 1.0
CB A:GLN11 4.9 36.0 1.0
O A:ARG9 5.0 38.2 1.0
O A:SER25 5.0 32.2 1.0

Chlorine binding site 3 out of 7 in 6ebc

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Chlorine binding site 3 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:51.9
occ:1.00
 N B:SER77 3.1 64.2 1.0
N B:GLY107 3.2 53.9 1.0
CA B:LEU105 3.4 45.6 1.0
C B:LEU105 3.4 47.4 1.0
CB B:SER77 3.6 63.5 1.0
N B:PRO106 3.6 49.1 1.0
CA B:GLY107 3.7 56.2 1.0
CB B:LEU105 3.8 46.2 1.0
CD B:PRO106 3.8 48.1 1.0
CA B:LEU76 3.8 66.0 1.0
O B:LEU105 3.9 49.5 1.0
CA B:SER77 3.9 62.9 1.0
C B:LEU76 3.9 67.6 1.0
CD2 B:LEU105 3.9 44.0 1.0
CG B:LEU108 4.0 48.2 1.0
N B:LEU108 4.1 55.1 1.0
CD2 B:LEU76 4.2 62.7 1.0
CB B:LEU76 4.2 62.9 1.0
C B:GLY107 4.2 56.5 1.0
C B:PRO106 4.3 54.6 1.0
CB B:ALA80 4.4 45.9 1.0
CG B:LEU105 4.5 44.1 1.0
CA B:PRO106 4.6 52.6 1.0
OG B:SER77 4.6 63.4 1.0
CD1 B:LEU108 4.6 46.0 1.0
CG B:PRO106 4.6 50.0 1.0
O B:SER77 4.7 55.4 1.0
N B:LEU105 4.8 44.3 1.0
CB B:LEU108 4.8 50.1 1.0
CD2 B:LEU108 4.8 51.2 1.0
C B:SER77 4.8 59.0 1.0
CG B:LEU76 4.8 62.5 1.0
CA B:ALA80 4.9 47.0 1.0
O B:THR75 4.9 76.2 1.0

Chlorine binding site 4 out of 7 in 6ebc

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Chlorine binding site 4 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:55.1
occ:1.00
 NE2 B:GLN11 2.8 53.7 1.0
OG1 B:THR13 2.9 40.6 1.0
N B:THR13 3.5 35.6 1.0
CG B:GLN11 3.5 50.2 1.0
C B:ALA12 3.6 36.6 1.0
CB B:SER25 3.6 49.6 1.0
CD B:GLN11 3.6 54.7 1.0
N B:SER25 3.6 42.6 1.0
O B:GLN11 3.7 39.2 1.0
CA B:SER25 3.7 46.3 1.0
C B:GLN11 3.7 39.5 1.0
CB B:THR13 3.7 38.0 1.0
CA B:ALA12 3.7 35.9 1.0
N B:ALA12 3.8 36.8 1.0
O B:GLU23 3.8 37.9 1.0
CB B:GLN11 4.0 46.3 1.0
CA B:THR13 4.2 36.4 1.0
O B:ALA12 4.2 37.0 1.0
C B:SER24 4.2 39.8 1.0
OG B:SER25 4.4 54.5 1.0
CA B:GLN11 4.5 41.5 1.0
OG D:SER83 4.8 41.0 1.0
OE1 B:GLN11 4.8 59.9 1.0
O B:SER24 4.8 39.9 1.0
CA B:SER24 4.8 37.0 1.0
C B:GLU23 4.9 36.3 1.0

Chlorine binding site 5 out of 7 in 6ebc

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Chlorine binding site 5 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:45.7
occ:1.00
 N C:GLY107 3.1 49.7 1.0
N C:SER77 3.1 51.2 1.0
C C:LEU105 3.3 43.9 1.0
CA C:LEU105 3.4 42.8 1.0
N C:PRO106 3.5 45.0 1.0
CB C:SER77 3.5 53.2 1.0
CA C:GLY107 3.6 52.8 1.0
CD C:PRO106 3.8 44.2 1.0
O C:LEU105 3.8 45.0 1.0
CB C:LEU105 3.8 42.9 1.0
CA C:SER77 3.9 52.6 1.0
CA C:LEU76 4.0 56.3 1.0
N C:LEU108 4.0 50.7 1.0
C C:LEU76 4.0 54.9 1.0
CD2 C:LEU105 4.1 41.6 1.0
C C:GLY107 4.1 52.3 1.0
C C:PRO106 4.2 50.1 1.0
CG C:LEU108 4.2 49.0 1.0
CB C:ALA80 4.3 41.8 1.0
CB C:LEU76 4.3 52.6 1.0
OG C:SER77 4.4 52.3 1.0
CA C:PRO106 4.4 48.2 1.0
CD2 C:LEU76 4.4 54.9 1.0
CG C:PRO106 4.6 46.8 1.0
CG C:LEU105 4.6 40.6 1.0
O C:SER77 4.7 46.3 1.0
N C:LEU105 4.7 41.5 1.0
CA C:ALA80 4.8 41.3 1.0
CD1 C:LEU108 4.8 47.0 1.0
C C:SER77 4.8 49.8 1.0
CB C:LEU108 4.8 49.2 1.0
CG C:LEU76 5.0 52.7 1.0
CD2 C:LEU108 5.0 52.8 1.0
N C:ALA80 5.0 42.0 1.0

Chlorine binding site 6 out of 7 in 6ebc

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Chlorine binding site 6 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl203

b:45.0
occ:1.00
 OG1 C:THR13 2.8 29.5 1.0
O B:HOH338 2.9 52.8 1.0
NE2 C:GLN11 2.9 41.9 1.0
CG C:GLN11 3.4 39.1 1.0
N C:THR13 3.5 28.8 1.0
CD C:GLN11 3.6 40.3 1.0
C C:ALA12 3.6 28.2 1.0
CB C:SER25 3.6 30.0 1.0
N C:SER25 3.6 26.7 1.0
CA C:SER25 3.6 29.0 1.0
CB C:THR13 3.7 29.9 1.0
CA C:ALA12 3.8 28.3 1.0
O C:GLU23 3.8 27.9 1.0
O C:GLN11 3.9 28.6 1.0
C C:GLN11 3.9 29.7 1.0
N C:ALA12 3.9 28.7 1.0
CB C:GLN11 4.1 33.8 1.0
O C:ALA12 4.2 28.5 1.0
CA C:THR13 4.2 29.2 1.0
C C:SER24 4.2 26.7 1.0
OG C:SER25 4.5 29.3 1.0
CA C:GLN11 4.6 31.0 1.0
OE1 C:GLN11 4.7 45.3 1.0
O C:SER24 4.7 28.4 1.0
OG A:SER83 4.8 33.8 1.0
CA C:SER24 4.8 26.0 1.0
C C:GLU23 4.9 27.6 1.0

Chlorine binding site 7 out of 7 in 6ebc

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Chlorine binding site 7 out of 7 in the Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl202

b:41.6
occ:1.00
 OG D:SER25 2.7 41.4 1.0
OG1 D:THR10 2.8 33.0 1.0
N D:ASP26 3.3 32.3 1.0
N D:GLN11 3.4 35.4 1.0
N D:SER25 3.6 31.8 1.0
CG D:ASP26 3.7 30.6 1.0
O D:GLN11 3.7 31.4 1.0
CA D:THR10 3.7 35.1 1.0
CB D:THR10 3.7 32.6 1.0
CB D:ASP26 3.7 32.4 1.0
O D:HOH304 3.7 36.0 1.0
NE2 B:GLN51 3.8 31.9 1.0
OD1 D:ASP26 3.9 27.5 1.0
CB D:SER25 3.9 37.4 1.0
OD2 D:ASP26 4.0 33.1 1.0
C D:SER25 4.0 34.2 1.0
CA D:SER25 4.0 35.1 1.0
C D:THR10 4.1 36.8 1.0
CA D:ASP26 4.1 33.3 1.0
CB D:SER24 4.4 26.6 1.0
C D:SER24 4.5 31.1 1.0
CA D:GLN11 4.5 36.3 1.0
C D:GLN11 4.5 34.1 1.0
CA D:SER24 4.8 29.5 1.0
CB D:GLN11 4.8 40.6 1.0
O D:ARG9 4.9 35.3 1.0
CD B:GLN51 4.9 31.3 1.0
OG D:SER24 5.0 26.8 1.0

Reference:

R.M.Domingos, R.D.Teixeira, T.G.P.Alegria, P.S.Vieira, M.T.Murakami, L.E.S.Netto. Ohrb (Organic Hydroperoxide Resistance Protein) Wild Type From Chromobacterium Violaceum and Reduced By Dtt at 1.85 Angstroms Resolution To Be Published.
Page generated: Sat Jul 12 13:24:25 2025

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