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Chlorine in PDB 6ej1: Crystal Structure of KDM5B in Complex with KDOPZ48A.

Protein crystallography data

The structure of Crystal Structure of KDM5B in Complex with KDOPZ48A., PDB code: 6ej1 was solved by V.Srikannathasan, J.A.Newman, A.Szykowska, M.Wright, G.F.Ruda, S.A.Vazquez-Rodriguez, K.Kupinska, C.Strain-Damerell, N.A.Burgess-Brown, C.H.Arrowsmith, A.Edwards, C.Bountra, U.Oppermann, K.Huber, F.Vondelft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.61 / 2.07
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.210, 143.210, 153.820, 90.00, 90.00, 120.00
R / Rfree (%) 19.5 / 21.8

Other elements in 6ej1:

The structure of Crystal Structure of KDM5B in Complex with KDOPZ48A. also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of KDM5B in Complex with KDOPZ48A. (pdb code 6ej1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of KDM5B in Complex with KDOPZ48A., PDB code: 6ej1:

Chlorine binding site 1 out of 1 in 6ej1

Go back to Chlorine Binding Sites List in 6ej1
Chlorine binding site 1 out of 1 in the Crystal Structure of KDM5B in Complex with KDOPZ48A.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of KDM5B in Complex with KDOPZ48A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl807

b:0.5
occ:1.00
CL A:B7Q807 0.0 0.5 1.0
C16 A:B7Q807 1.8 0.6 1.0
C15 A:B7Q807 2.7 0.3 1.0
O1 A:B7Q807 3.1 0.2 1.0
N5 A:B7Q807 3.8 90.1 1.0
CZ2 A:TRP486 4.0 55.2 1.0
O A:HOH1063 4.2 43.5 1.0
C2 A:DMS804 4.3 69.5 1.0
C17 A:B7Q807 4.4 84.0 1.0
O A:HOH1122 4.4 53.6 1.0
CE2 A:TRP486 4.4 51.1 1.0
NE1 A:TRP486 4.6 49.4 1.0
CH2 A:TRP486 4.6 55.0 1.0
OD2 A:ASP502 4.7 57.5 1.0
O A:HOH932 4.8 68.1 1.0

Reference:

V.Srikannathasan, V.Srikannathasan, J.A.Newman, A.Szykowska, M.Wright, G.F.Ruda, S.A.Vazquez-Rodriguez, K.Kupinska, C.Strain-Damerell, N.A.Burgess-Brown, C.H.Arrowsmith, A.Edwards, C.Bountra, U.Oppermann, K.Huber, F.Vondelft. N/A N/A.
Page generated: Sat Jul 12 13:27:03 2025

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