Atomistry » Chlorine » PDB 6fl5-6frq » 6fql
Atomistry »
  Chlorine »
    PDB 6fl5-6frq »
      6fql »

Chlorine in PDB 6fql: Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna

Enzymatic activity of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna

All present enzymatic activity of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna:
2.3.2.27;

Protein crystallography data

The structure of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna, PDB code: 6fql was solved by P.Kumari, F.Aeschimann, D.Gaidatzis, J.J.Keusch, P.Ghosh, A.Neagu, K.Pachulska-Wieczorek, J.M.Bujnicki, H.Gut, H.Grosshans, R.Ciosk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.30 / 2.35
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 101.490, 101.490, 108.940, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 21.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna (pdb code 6fql). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna, PDB code: 6fql:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 1 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl901

b:92.0
occ:1.00
OE2 A:GLU555 2.9 96.2 1.0
CD A:GLU555 3.9 96.2 1.0
O A:HOH1037 4.1 60.3 1.0
ND2 A:ASN819 4.1 60.7 1.0
CG A:ARG564 4.2 57.1 1.0
O4 B:U6 4.5 91.0 1.0
OD1 A:ASN819 4.5 61.2 1.0
CG A:GLU555 4.5 90.5 1.0
CD A:ARG564 4.7 57.3 1.0
CG A:ASN819 4.7 62.4 1.0
SG A:CYS563 4.8 75.7 1.0
OE1 A:GLU555 4.8 0.6 1.0
C4 B:U6 5.0 88.5 1.0

Chlorine binding site 2 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 2 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:92.5
occ:0.50
NZ A:LYS649 3.7 69.6 1.0
CA A:GLY650 4.0 58.7 1.0
N A:GLY650 4.4 57.6 1.0
C A:GLY650 4.6 56.3 1.0
CG A:LYS649 4.6 64.9 1.0
CG2 A:THR651 4.7 49.0 1.0
CE A:LYS649 4.9 68.4 1.0
CD A:LYS649 4.9 69.0 1.0
N A:THR651 4.9 56.1 1.0

Chlorine binding site 3 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 3 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:95.4
occ:1.00
N A:ASN653 3.4 57.7 1.0
ND2 A:ASN653 3.8 57.9 1.0
CG A:ASN653 3.8 58.0 1.0
CA A:LYS652 3.8 60.3 1.0
CB A:LYS652 3.9 63.9 1.0
OD1 A:ASN653 4.1 56.8 1.0
CG A:LYS652 4.2 67.0 1.0
C A:LYS652 4.2 58.4 1.0
CB A:ASN653 4.3 60.5 1.0
CA A:ASN653 4.5 58.8 1.0

Chlorine binding site 4 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 4 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl904

b:91.7
occ:1.00
NE2 A:HIS678 3.0 46.9 1.0
CD2 A:HIS678 3.8 47.5 1.0
CE2 A:TRP700 4.0 52.6 1.0
CE1 A:HIS678 4.0 46.1 1.0
NE1 A:TRP700 4.1 53.7 1.0
CZ2 A:TRP700 4.2 51.5 1.0
CD2 A:TRP700 4.3 52.4 1.0
CD1 A:TRP700 4.5 53.3 1.0
CG A:TRP700 4.6 51.7 1.0
CH2 A:TRP700 4.7 52.2 1.0
CE3 A:TRP700 4.8 49.9 1.0
CZ3 A:TRP700 5.0 51.2 1.0
CG A:HIS678 5.0 45.3 1.0

Chlorine binding site 5 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 5 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl905

b:91.9
occ:1.00
NE2 A:HIS702 3.8 53.0 1.0
CE1 A:HIS702 3.9 53.0 1.0
CD2 A:HIS702 4.1 51.9 1.0
ND1 A:HIS702 4.3 52.8 1.0
CG A:HIS702 4.4 51.7 1.0
CL A:CL908 4.8 88.8 1.0
N A:HIS702 4.8 44.1 1.0
O A:LYS701 4.9 44.8 1.0
C A:LYS701 4.9 44.9 1.0
CB A:LYS701 4.9 54.0 1.0
CA A:HIS702 5.0 45.7 1.0

Chlorine binding site 6 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 6 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl906

b:0.0
occ:1.00
O B:HOH112 3.1 71.5 1.0
NH2 A:ARG676 3.3 52.1 0.5
N7 B:A9 3.5 53.4 1.0
N6 B:A9 4.0 55.7 1.0
CZ A:ARG676 4.4 52.9 0.5
C5 B:A9 4.4 54.1 1.0
C8 B:A9 4.5 51.8 1.0
C6 B:A9 4.7 56.2 1.0
NH1 A:ARG676 4.8 52.3 0.5
N7 B:A8 5.0 59.1 1.0

Chlorine binding site 7 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 7 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl907

b:0.6
occ:1.00
O B:HOH105 3.5 70.0 1.0
NE A:ARG564 3.6 57.2 1.0
NH2 A:ARG564 3.6 54.7 1.0
CZ A:PHE816 3.8 59.3 1.0
CZ A:ARG564 4.1 56.7 1.0
O B:HOH111 4.3 67.5 1.0
CE2 A:PHE816 4.4 60.7 1.0
O2' B:A8 4.5 52.3 1.0
O A:HOH1063 4.6 70.4 1.0
CD A:ARG564 4.7 57.3 1.0
CE1 A:PHE816 4.7 56.9 1.0
NH1 A:ARG799 4.8 59.6 1.0
O B:HOH108 5.0 63.9 1.0

Chlorine binding site 8 out of 8 in 6fql

Go back to Chlorine Binding Sites List in 6fql
Chlorine binding site 8 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl908

b:88.8
occ:1.00
NE A:ARG726 3.4 44.5 1.0
ND2 A:ASN724 3.9 44.6 1.0
NH2 A:ARG726 4.0 47.8 1.0
CZ A:ARG726 4.1 45.3 1.0
CD A:ARG726 4.2 43.6 1.0
O A:HIS702 4.3 52.0 1.0
O A:HOH1012 4.3 51.9 1.0
CG A:ASN724 4.4 41.9 1.0
CA A:HIS702 4.5 45.7 1.0
CD2 A:HIS702 4.7 51.9 1.0
CB A:ASN724 4.8 39.1 1.0
CL A:CL905 4.8 91.9 1.0
C A:HIS702 4.8 49.0 1.0
CE1 A:PHE739 4.8 41.9 1.0
CD1 A:PHE739 4.9 42.2 1.0
O A:LYS701 5.0 44.8 1.0
OD1 A:ASN724 5.0 44.1 1.0

Reference:

P.Kumari, F.Aeschimann, D.Gaidatzis, J.J.Keusch, P.Ghosh, A.Neagu, K.Pachulska-Wieczorek, J.M.Bujnicki, H.Gut, H.Grosshans, R.Ciosk. Evolutionary Plasticity of the Nhl Domain Underlies Distinct Solutions to Rna Recognition. Nat Commun V. 9 1549 2018.
ISSN: ESSN 2041-1723
PubMed: 29674686
DOI: 10.1038/S41467-018-03920-7
Page generated: Sat Jul 12 14:11:00 2025

Last articles

Fe in 2G6N
Fe in 2G6M
Fe in 2G6L
Fe in 2G6K
Fe in 2FYN
Fe in 2G6J
Fe in 2G6I
Fe in 2G6H
Fe in 2G5G
Fe in 2G3H
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy