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Chlorine in PDB 6fql: Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna

Enzymatic activity of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna

All present enzymatic activity of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna:
2.3.2.27;

Protein crystallography data

The structure of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna, PDB code: 6fql was solved by P.Kumari, F.Aeschimann, D.Gaidatzis, J.J.Keusch, P.Ghosh, A.Neagu, K.Pachulska-Wieczorek, J.M.Bujnicki, H.Gut, H.Grosshans, R.Ciosk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.30 / 2.35
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 101.490, 101.490, 108.940, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 21.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna (pdb code 6fql). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna, PDB code: 6fql:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 6fql

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Chlorine binding site 1 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl901

b:92.0
occ:1.00
 OE2 A:GLU555 2.9 96.2 1.0
CD A:GLU555 3.9 96.2 1.0
O A:HOH1037 4.1 60.3 1.0
ND2 A:ASN819 4.1 60.7 1.0
CG A:ARG564 4.2 57.1 1.0
O4 B:U6 4.5 91.0 1.0
OD1 A:ASN819 4.5 61.2 1.0
CG A:GLU555 4.5 90.5 1.0
CD A:ARG564 4.7 57.3 1.0
CG A:ASN819 4.7 62.4 1.0
SG A:CYS563 4.8 75.7 1.0
OE1 A:GLU555 4.8 0.6 1.0
C4 B:U6 5.0 88.5 1.0

Chlorine binding site 2 out of 8 in 6fql

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Chlorine binding site 2 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:92.5
occ:0.50
 NZ A:LYS649 3.7 69.6 1.0
CA A:GLY650 4.0 58.7 1.0
N A:GLY650 4.4 57.6 1.0
C A:GLY650 4.6 56.3 1.0
CG A:LYS649 4.6 64.9 1.0
CG2 A:THR651 4.7 49.0 1.0
CE A:LYS649 4.9 68.4 1.0
CD A:LYS649 4.9 69.0 1.0
N A:THR651 4.9 56.1 1.0

Chlorine binding site 3 out of 8 in 6fql

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Chlorine binding site 3 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:95.4
occ:1.00
 N A:ASN653 3.4 57.7 1.0
ND2 A:ASN653 3.8 57.9 1.0
CG A:ASN653 3.8 58.0 1.0
CA A:LYS652 3.8 60.3 1.0
CB A:LYS652 3.9 63.9 1.0
OD1 A:ASN653 4.1 56.8 1.0
CG A:LYS652 4.2 67.0 1.0
C A:LYS652 4.2 58.4 1.0
CB A:ASN653 4.3 60.5 1.0
CA A:ASN653 4.5 58.8 1.0

Chlorine binding site 4 out of 8 in 6fql

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Chlorine binding site 4 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl904

b:91.7
occ:1.00
 NE2 A:HIS678 3.0 46.9 1.0
CD2 A:HIS678 3.8 47.5 1.0
CE2 A:TRP700 4.0 52.6 1.0
CE1 A:HIS678 4.0 46.1 1.0
NE1 A:TRP700 4.1 53.7 1.0
CZ2 A:TRP700 4.2 51.5 1.0
CD2 A:TRP700 4.3 52.4 1.0
CD1 A:TRP700 4.5 53.3 1.0
CG A:TRP700 4.6 51.7 1.0
CH2 A:TRP700 4.7 52.2 1.0
CE3 A:TRP700 4.8 49.9 1.0
CZ3 A:TRP700 5.0 51.2 1.0
CG A:HIS678 5.0 45.3 1.0

Chlorine binding site 5 out of 8 in 6fql

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Chlorine binding site 5 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl905

b:91.9
occ:1.00
 NE2 A:HIS702 3.8 53.0 1.0
CE1 A:HIS702 3.9 53.0 1.0
CD2 A:HIS702 4.1 51.9 1.0
ND1 A:HIS702 4.3 52.8 1.0
CG A:HIS702 4.4 51.7 1.0
CL A:CL908 4.8 88.8 1.0
N A:HIS702 4.8 44.1 1.0
O A:LYS701 4.9 44.8 1.0
C A:LYS701 4.9 44.9 1.0
CB A:LYS701 4.9 54.0 1.0
CA A:HIS702 5.0 45.7 1.0

Chlorine binding site 6 out of 8 in 6fql

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Chlorine binding site 6 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl906

b:0.0
occ:1.00
 O B:HOH112 3.1 71.5 1.0
NH2 A:ARG676 3.3 52.1 0.5
N7 B:A9 3.5 53.4 1.0
N6 B:A9 4.0 55.7 1.0
CZ A:ARG676 4.4 52.9 0.5
C5 B:A9 4.4 54.1 1.0
C8 B:A9 4.5 51.8 1.0
C6 B:A9 4.7 56.2 1.0
NH1 A:ARG676 4.8 52.3 0.5
N7 B:A8 5.0 59.1 1.0

Chlorine binding site 7 out of 8 in 6fql

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Chlorine binding site 7 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl907

b:0.6
occ:1.00
 O B:HOH105 3.5 70.0 1.0
NE A:ARG564 3.6 57.2 1.0
NH2 A:ARG564 3.6 54.7 1.0
CZ A:PHE816 3.8 59.3 1.0
CZ A:ARG564 4.1 56.7 1.0
O B:HOH111 4.3 67.5 1.0
CE2 A:PHE816 4.4 60.7 1.0
O2' B:A8 4.5 52.3 1.0
O A:HOH1063 4.6 70.4 1.0
CD A:ARG564 4.7 57.3 1.0
CE1 A:PHE816 4.7 56.9 1.0
NH1 A:ARG799 4.8 59.6 1.0
O B:HOH108 5.0 63.9 1.0

Chlorine binding site 8 out of 8 in 6fql

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Chlorine binding site 8 out of 8 in the Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Danio Rerio LIN41 Filamin-Nhl Domains in Complex with Mab-10 3'Utr 13MER Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl908

b:88.8
occ:1.00
 NE A:ARG726 3.4 44.5 1.0
ND2 A:ASN724 3.9 44.6 1.0
NH2 A:ARG726 4.0 47.8 1.0
CZ A:ARG726 4.1 45.3 1.0
CD A:ARG726 4.2 43.6 1.0
O A:HIS702 4.3 52.0 1.0
O A:HOH1012 4.3 51.9 1.0
CG A:ASN724 4.4 41.9 1.0
CA A:HIS702 4.5 45.7 1.0
CD2 A:HIS702 4.7 51.9 1.0
CB A:ASN724 4.8 39.1 1.0
CL A:CL905 4.8 91.9 1.0
C A:HIS702 4.8 49.0 1.0
CE1 A:PHE739 4.8 41.9 1.0
CD1 A:PHE739 4.9 42.2 1.0
O A:LYS701 5.0 44.8 1.0
OD1 A:ASN724 5.0 44.1 1.0

Reference:

P.Kumari, F.Aeschimann, D.Gaidatzis, J.J.Keusch, P.Ghosh, A.Neagu, K.Pachulska-Wieczorek, J.M.Bujnicki, H.Gut, H.Grosshans, R.Ciosk. Evolutionary Plasticity of the Nhl Domain Underlies Distinct Solutions to Rna Recognition. Nat Commun V. 9 1549 2018.
ISSN: ESSN 2041-1723
PubMed: 29674686
DOI: 10.1038/S41467-018-03920-7
Page generated: Sat Jul 12 14:11:00 2025

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