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Chlorine in PDB 6g8x: Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2

Enzymatic activity of Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2

All present enzymatic activity of Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2:
2.7.11.24;

Protein crystallography data

The structure of Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2, PDB code: 6g8x was solved by M.O'reilly, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.41 / 1.76
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.823, 70.741, 60.590, 90.00, 109.69, 90.00
R / Rfree (%) 16.5 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2 (pdb code 6g8x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2, PDB code: 6g8x:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6g8x

Go back to Chlorine Binding Sites List in 6g8x
Chlorine binding site 1 out of 2 in the Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:35.0
occ:0.76
CL1 A:EQT403 0.0 35.0 0.8
C9 A:EQT403 1.7 31.9 0.8
H13 A:EQT403 2.5 33.0 0.8
C8 A:EQT403 2.7 29.2 0.8
C11 A:EQT403 2.7 31.5 0.8
H17 A:EQT403 2.8 29.7 0.8
N1 A:EQT403 3.3 32.9 0.8
C2 A:EQT403 3.3 35.4 0.8
CD1 A:TYR64 3.6 51.8 1.0
CB A:TYR64 3.7 42.7 1.0
CA A:TYR64 3.8 38.0 1.0
O A:TYR64 3.8 29.9 1.0
CG A:TYR64 3.8 49.8 1.0
OG1 A:THR68 3.9 25.0 1.0
C7 A:EQT403 4.0 30.4 0.8
C5 A:EQT403 4.0 30.8 0.8
H14 A:EQT403 4.2 32.1 0.8
CB A:ARG67 4.2 25.6 1.0
CG2 A:ILE56 4.3 30.0 1.0
C A:TYR64 4.3 34.7 1.0
CE1 A:TYR64 4.5 54.5 1.0
CD A:ARG67 4.5 32.1 1.0
C6 A:EQT403 4.5 27.2 0.8
N3 A:EQT403 4.6 35.1 0.8
N A:TYR36 4.6 79.3 1.0
O A:HOH789 4.6 46.3 1.0
CB A:ALA35 4.7 81.1 1.0
N A:THR68 4.7 22.8 1.0
H16 A:EQT403 4.8 31.1 0.8
CD2 A:TYR64 4.9 53.8 1.0
N4 A:EQT403 4.9 32.0 0.8

Chlorine binding site 2 out of 2 in 6g8x

Go back to Chlorine Binding Sites List in 6g8x
Chlorine binding site 2 out of 2 in the Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Fragment-Based Discovery of A Highly Potent, Orally Bioavailable Inhibitor Which Modulates the Phosphorylation and Catalytic Activity of ERK1/2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:45.4
occ:0.87
CL1 A:EQT404 0.0 45.4 0.9
C9 A:EQT404 1.7 36.2 0.9
H13 A:EQT404 2.5 32.8 0.9
C8 A:EQT404 2.7 39.2 0.9
C11 A:EQT404 2.7 27.6 0.9
H17 A:EQT404 2.8 40.1 0.9
N1 A:EQT404 3.3 32.0 0.9
C2 A:EQT404 3.4 26.5 0.9
CG2 A:ILE31 4.0 59.0 1.0
C7 A:EQT404 4.0 37.9 0.9
C5 A:EQT404 4.0 27.8 0.9
CG1 A:VAL39 4.0 44.7 1.0
O A:HOH619 4.1 42.2 1.0
H14 A:EQT404 4.2 31.7 0.9
O A:HOH628 4.3 35.8 1.0
O A:HOH601 4.4 40.9 1.0
C6 A:EQT404 4.5 35.9 0.9
N3 A:EQT404 4.7 19.5 0.9
CB A:VAL39 4.7 45.7 1.0
H16 A:EQT404 4.8 38.9 0.9
N4 A:EQT404 4.9 23.4 0.9
CG2 A:VAL39 4.9 45.3 1.0

Reference:

T.D.Heightman, V.Berdini, H.Braithwaite, I.M.Buck, M.Cassidy, J.Castro, A.Courtin, J.E.H.Day, C.East, L.Fazal, B.Graham, C.M.Griffiths-Jones, J.F.Lyons, V.Martins, S.Muench, J.M.Munck, D.Norton, M.O'reilly, N.Palmer, P.Pathuri, M.Reader, D.C.Rees, S.J.Rich, C.Richardson, H.Saini, N.T.Thompson, N.G.Wallis, H.Walton, N.E.Wilsher, A.J.Woolford, M.Cooke, D.Cousin, S.Onions, J.Shannon, J.Watts, C.W.Murray. Fragment-Based Discovery of A Potent, Orally Bioavailable Inhibitor That Modulates the Phosphorylation and Catalytic Activity of ERK1/2. J. Med. Chem. V. 61 4978 2018.
ISSN: ISSN 1520-4804
PubMed: 29775310
DOI: 10.1021/ACS.JMEDCHEM.8B00421
Page generated: Sat Jul 27 23:52:27 2024

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