Atomistry » Chlorine » PDB 6hvy-6hzz » 6hy4
Atomistry »
  Chlorine »
    PDB 6hvy-6hzz »
      6hy4 »

Chlorine in PDB 6hy4: Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

Enzymatic activity of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

All present enzymatic activity of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl):
3.2.1.17;

Protein crystallography data

The structure of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy4 was solved by L.Vandebroek, L.Van Meervelt, T.N.Parac-Vogt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.92 / 1.83
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.734, 78.734, 37.179, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.5

Other elements in 6hy4:

The structure of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) also contains other interesting chemical elements:

Tungsten (W) 17 atoms
Cobalt (Co) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) (pdb code 6hy4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy4:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 6hy4

Go back to Chlorine Binding Sites List in 6hy4
Chlorine binding site 1 out of 5 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:37.0
occ:0.52
 CL A:CL202 0.0 37.0 0.5
HD22 A:ASN65 2.4 45.9 1.0
CL A:CL202 2.6 38.1 0.5
ND2 A:ASN65 3.2 37.6 1.0
HB3 A:ASN65 3.2 31.8 1.0
HB3 A:PRO79 3.4 29.6 1.0
O A:HOH366 3.6 37.6 1.0
HD21 A:ASN65 3.6 45.9 1.0
O A:HOH362 3.7 49.8 1.0
HA A:PRO79 3.9 28.6 1.0
CB A:ASN65 4.0 25.9 1.0
CG A:ASN65 4.0 30.8 1.0
HD3 A:PRO79 4.1 27.3 1.0
CB A:PRO79 4.2 24.1 1.0
HD21 A:ASN74 4.3 37.8 1.0
N A:PRO79 4.3 23.6 1.0
CA A:PRO79 4.4 23.2 1.0
HB2 A:ASN65 4.4 31.8 1.0
CD A:PRO79 4.6 22.2 1.0
HG3 A:PRO79 4.6 32.0 1.0
HD22 A:ASN74 4.6 37.8 1.0
ND2 A:ASN74 4.7 30.9 1.0
C A:ILE78 4.7 24.6 1.0
CG A:PRO79 4.7 26.1 1.0
O A:ASN65 4.9 25.7 1.0
O A:ILE78 4.9 26.4 1.0

Chlorine binding site 2 out of 5 in 6hy4

Go back to Chlorine Binding Sites List in 6hy4
Chlorine binding site 2 out of 5 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:38.1
occ:0.48
 CL A:CL202 0.0 38.1 0.5
HD21 A:ASN74 2.5 37.8 1.0
CL A:CL202 2.6 37.0 0.5
HD3 A:PRO79 3.1 27.3 1.0
HA A:ILE78 3.3 34.8 1.0
ND2 A:ASN74 3.3 30.9 1.0
C A:ILE78 3.4 24.6 1.0
HD22 A:ASN74 3.5 37.8 1.0
N A:PRO79 3.6 23.6 1.0
CA A:ILE78 3.6 28.4 1.0
N A:ILE78 3.7 28.5 1.0
HB3 A:ASN65 3.8 31.8 1.0
CD A:PRO79 3.8 22.2 1.0
O A:ILE78 3.9 26.4 1.0
H A:ILE78 3.9 34.9 1.0
C A:ASN77 4.0 35.9 1.0
O A:ASN77 4.1 30.9 1.0
HA A:PRO79 4.2 28.6 1.0
OD1 A:ASN77 4.2 53.8 1.0
O A:HOH362 4.2 49.8 1.0
HA A:ASN77 4.3 44.4 1.0
HD22 A:ASN65 4.3 45.9 1.0
CA A:PRO79 4.4 23.2 1.0
HB3 A:PRO79 4.4 29.6 1.0
CG A:ASN74 4.4 32.1 1.0
HD2 A:PRO79 4.5 27.3 1.0
CB A:ASN65 4.7 25.9 1.0
HB2 A:ASN65 4.7 31.8 1.0
CA A:ASN77 4.7 36.4 1.0
CG A:PRO79 4.8 26.1 1.0
CG A:ASN77 4.8 61.8 1.0
OD1 A:ASN74 4.8 26.7 1.0
HG3 A:PRO79 4.8 32.0 1.0
CB A:PRO79 4.8 24.1 1.0
H A:ASN65 4.8 27.6 1.0

Chlorine binding site 3 out of 5 in 6hy4

Go back to Chlorine Binding Sites List in 6hy4
Chlorine binding site 3 out of 5 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:32.4
occ:1.00
 HH A:TYR23 2.3 25.1 1.0
OH A:TYR23 2.9 20.4 1.0
HE2 A:TYR23 3.2 23.1 1.0
HA3 A:GLY104 3.3 31.7 1.0
CZ A:TYR23 3.6 21.6 1.0
CE2 A:TYR23 3.7 18.7 1.0
HA2 A:GLY104 3.8 31.7 1.0
CA A:GLY104 4.0 25.9 1.0
O A:ARG21 4.6 28.2 1.0
H A:MET105 4.6 23.5 1.0
N A:GLY104 4.7 23.6 1.0
O A:HOH324 4.7 32.8 1.0
CE1 A:TYR23 4.8 21.2 1.0
HH11 A:ARG21 4.9 63.1 1.0
H A:GLY104 4.9 29.1 1.0
CD2 A:TYR23 4.9 20.9 1.0
HB3 A:ARG21 5.0 38.5 1.0

Chlorine binding site 4 out of 5 in 6hy4

Go back to Chlorine Binding Sites List in 6hy4
Chlorine binding site 4 out of 5 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:35.3
occ:0.46
 CL A:CL204 0.0 35.3 0.5
CL A:CL204 1.6 42.2 0.5
O A:HOH368 1.8 33.9 0.5
O A:HOH368 3.2 34.5 0.5
O A:ALA122 3.8 31.0 1.0
HA A:TRP123 3.9 34.0 1.0
HD2 A:ARG5 3.9 43.8 1.0
HD3 A:ARG5 4.1 43.8 1.0
NE A:ARG5 4.3 37.3 1.0
CD A:ARG5 4.4 35.9 1.0
CE3 A:TRP123 4.4 29.5 1.0
HB1 A:ALA122 4.5 42.3 1.0
HE3 A:TRP123 4.5 36.1 1.0
CZ A:ARG5 4.6 42.6 1.0
CZ3 A:TRP123 4.6 32.6 1.0
C A:ALA122 4.6 28.8 1.0
HE A:ARG5 4.7 45.4 1.0
HZ3 A:TRP123 4.7 39.9 1.0
HH11 A:ARG5 4.8 42.9 1.0
CA A:TRP123 4.8 27.8 1.0
CD2 A:TRP123 4.8 24.9 1.0
NH1 A:ARG5 4.8 35.2 1.0

Chlorine binding site 5 out of 5 in 6hy4

Go back to Chlorine Binding Sites List in 6hy4
Chlorine binding site 5 out of 5 in the Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Co(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:42.2
occ:0.54
 CL A:CL204 0.0 42.2 0.5
CL A:CL204 1.6 35.3 0.5
O A:HOH368 1.7 34.5 0.5
O A:HOH368 3.1 33.9 0.5
HB1 A:ALA122 4.0 42.3 1.0
HA A:TRP123 4.0 34.0 1.0
O A:ALA122 4.2 31.0 1.0
CD2 A:TRP123 4.2 24.9 1.0
CE2 A:TRP123 4.2 31.3 1.0
CE3 A:TRP123 4.2 29.5 1.0
CZ3 A:TRP123 4.2 32.6 1.0
CZ2 A:TRP123 4.2 33.2 1.0
CH2 A:TRP123 4.2 33.3 1.0
HB3 A:ALA122 4.5 42.3 1.0
HE3 A:TRP123 4.6 36.1 1.0
C A:ALA122 4.6 28.8 1.0
HZ3 A:TRP123 4.6 39.9 1.0
HH2 A:TRP123 4.6 40.6 1.0
HZ2 A:TRP123 4.7 40.5 1.0
CB A:ALA122 4.7 34.7 1.0
NE1 A:TRP123 4.8 30.1 1.0
CG A:TRP123 4.8 30.2 1.0
CA A:TRP123 4.9 27.8 1.0
N A:TRP123 4.9 32.1 1.0
HD2 A:ARG5 5.0 43.8 1.0

Reference:

L.Vandebroek, Y.Mampaey, S.Antonyuk, L.Van Meervelt, T.N.Parac-Vogt. Noncovalent Complexes Formed Between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem 2019.
ISSN: ESSN 1099-0682
DOI: 10.1002/EJIC.201801113
Page generated: Sat Jul 12 15:30:37 2025

Last articles

Mg in 6HW8
Mg in 6HW7
Mg in 6HW5
Mg in 6HW6
Mg in 6HW4
Mg in 6HVY
Mg in 6HW3
Mg in 6HW0
Mg in 6HW1
Mg in 6HVX
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy