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Chlorine in PDB 6i29: X-Ray Structure of the P53-MDM2 Inhibitor NMI801 Bound to HDM2 at 2.1A Resolution

Protein crystallography data

The structure of X-Ray Structure of the P53-MDM2 Inhibitor NMI801 Bound to HDM2 at 2.1A Resolution, PDB code: 6i29 was solved by J.Kallen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.27 / 2.10
Space group I 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 121.883, 121.883, 121.883, 90.00, 90.00, 90.00
R / Rfree (%) 24.3 / 27.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the P53-MDM2 Inhibitor NMI801 Bound to HDM2 at 2.1A Resolution (pdb code 6i29). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the X-Ray Structure of the P53-MDM2 Inhibitor NMI801 Bound to HDM2 at 2.1A Resolution, PDB code: 6i29:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6i29

Go back to Chlorine Binding Sites List in 6i29
Chlorine binding site 1 out of 2 in the X-Ray Structure of the P53-MDM2 Inhibitor NMI801 Bound to HDM2 at 2.1A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the P53-MDM2 Inhibitor NMI801 Bound to HDM2 at 2.1A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:40.9
occ:1.00
CL1 A:H0W201 0.0 40.9 1.0
C8 A:H0W201 1.7 37.2 1.0
C6 A:H0W201 2.7 37.0 1.0
C9 A:H0W201 2.7 37.1 1.0
CG2 A:ILE99 3.7 40.2 1.0
ND1 A:HIS96 3.7 47.6 1.0
CG A:HIS96 3.7 46.7 1.0
CA A:HIS96 3.7 46.1 1.0
CZ A:TYR100 3.7 45.3 1.0
O A:HIS96 3.7 46.0 1.0
CB A:ILE99 3.8 41.0 1.0
CB A:HIS96 3.8 46.4 1.0
CE1 A:TYR100 3.9 45.2 1.0
OH A:TYR100 4.0 48.0 1.0
C4 A:H0W201 4.0 36.5 1.0
C2 A:H0W201 4.0 36.6 1.0
CE2 A:TYR100 4.0 45.7 1.0
CD1 A:ILE99 4.1 38.2 1.0
CD1 A:LEU54 4.2 35.6 1.0
C A:HIS96 4.2 46.1 1.0
CE1 A:HIS96 4.3 46.9 1.0
CD2 A:HIS96 4.3 47.1 1.0
CD1 A:TYR100 4.4 44.1 1.0
CD2 A:TYR100 4.5 44.6 1.0
CG1 A:ILE99 4.5 40.4 1.0
C3 A:H0W201 4.5 36.5 1.0
NE2 A:HIS96 4.6 47.5 1.0
CG A:TYR100 4.7 43.1 1.0
CG A:LEU54 4.8 33.3 1.0
N A:TYR100 4.9 41.6 1.0
N A:HIS96 4.9 46.1 1.0
CA A:ILE99 5.0 41.2 1.0

Chlorine binding site 2 out of 2 in 6i29

Go back to Chlorine Binding Sites List in 6i29
Chlorine binding site 2 out of 2 in the X-Ray Structure of the P53-MDM2 Inhibitor NMI801 Bound to HDM2 at 2.1A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of the P53-MDM2 Inhibitor NMI801 Bound to HDM2 at 2.1A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:32.5
occ:1.00
CL3 A:H0W201 0.0 32.5 1.0
C30 A:H0W201 1.7 31.6 1.0
C28 A:H0W201 2.7 32.2 1.0
C31 A:H0W201 2.7 31.2 1.0
CD1 A:ILE61 3.8 27.1 1.0
CG2 A:ILE99 3.9 40.2 1.0
CD1 A:LEU57 3.9 29.4 1.0
CE2 A:PHE86 3.9 33.1 1.0
C24 A:H0W201 4.0 33.0 1.0
CB A:LEU57 4.0 29.7 1.0
C26 A:H0W201 4.0 33.1 1.0
CZ A:PHE86 4.1 33.5 1.0
CZ A:PHE91 4.1 30.4 1.0
CE1 A:PHE91 4.3 29.7 1.0
C25 A:H0W201 4.5 32.5 1.0
CG A:LEU57 4.5 29.4 1.0
CD1 A:LEU54 4.6 35.6 1.0
CD1 A:ILE99 4.8 38.2 1.0
CD2 A:LEU57 4.8 31.3 1.0
CG1 A:ILE99 4.9 40.4 1.0

Reference:

J.Ornstein, Y.Iwamoto, M.Prytyskach, M.Miller, J.Kallen, S.Ferretti, P.Holzer, W.Forrester, R.Weissleder, G.Lahav. P53 Dynamics Vary Between Tissues and Are Linked with Radiation Sensitivity To Be Published.
Page generated: Sun Jul 28 01:31:50 2024

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