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Chlorine in PDB 6jgh: Crystal Structure of the F99S/M153T/V163A/T203I Variant of Gfp at 0.94 A

Protein crystallography data

The structure of Crystal Structure of the F99S/M153T/V163A/T203I Variant of Gfp at 0.94 A, PDB code: 6jgh was solved by H.Eki, Y.Tai, K.Takaba, Y.Hanazono, K.Miki, K.Takeda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.93 / 0.94
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.641, 62.506, 68.179, 90.00, 90.00, 90.00
R / Rfree (%) 10.7 / 12.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the F99S/M153T/V163A/T203I Variant of Gfp at 0.94 A (pdb code 6jgh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the F99S/M153T/V163A/T203I Variant of Gfp at 0.94 A, PDB code: 6jgh:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6jgh

Go back to Chlorine Binding Sites List in 6jgh
Chlorine binding site 1 out of 2 in the Crystal Structure of the F99S/M153T/V163A/T203I Variant of Gfp at 0.94 A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the F99S/M153T/V163A/T203I Variant of Gfp at 0.94 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:18.1
occ:0.30
CL A:CL301 0.0 18.1 0.3
CL A:CL301 0.6 6.9 0.4
O A:HOH634 2.5 9.2 0.3
H A:TRP57 2.6 5.4 1.0
O A:HOH615 2.7 11.3 1.0
O A:HOH654 2.7 11.3 0.8
HD1 A:TRP57 2.7 5.8 1.0
HD1 A:TYR143 2.8 7.7 1.0
HB2 A:TRP57 2.8 5.5 1.0
HD3 A:PRO58 2.9 5.5 1.0
O A:HOH654 3.1 11.9 0.2
N A:TRP57 3.3 4.5 1.0
O A:HOH546 3.4 11.2 1.0
HA A:PRO56 3.5 5.7 1.0
CD1 A:TRP57 3.5 4.8 1.0
CD1 A:TYR143 3.6 6.5 1.0
O A:HOH634 3.6 11.1 0.5
HD2 A:PRO58 3.6 5.5 1.0
CB A:TRP57 3.6 4.5 1.0
CD A:PRO58 3.7 4.6 1.0
HB3 A:PRO56 3.8 6.2 1.0
HE1 A:TYR143 3.9 7.4 1.0
CG A:TRP57 4.0 4.2 1.0
O A:HOH762 4.0 25.3 0.7
CA A:TRP57 4.1 4.1 1.0
HB2 A:TYR143 4.1 7.9 1.0
CA A:PRO56 4.1 4.8 1.0
CE1 A:TYR143 4.1 6.2 1.0
HZ1 A:LYS209 4.2 11.7 1.0
C A:PRO56 4.2 4.2 1.0
O A:HOH597 4.4 12.9 0.6
HB3 A:TRP57 4.4 5.5 1.0
CB A:PRO56 4.4 5.2 1.0
O A:HOH854 4.5 23.6 0.8
CG A:TYR143 4.5 5.6 1.0
HA A:TYR143 4.6 7.0 1.0
CG A:PRO58 4.7 5.1 1.0
HG2 A:PRO58 4.7 6.1 1.0
N A:PRO58 4.7 4.2 1.0
O A:HOH550 4.7 17.9 0.1
CB A:TYR143 4.7 6.6 1.0
H1 A:HOH600 4.8 10.7 1.0
O A:HOH600 4.8 7.2 1.0
NE1 A:TRP57 4.8 5.1 1.0
HG3 A:PRO58 4.8 6.1 1.0
O A:HOH781 4.8 33.3 0.7
HA A:TRP57 4.8 5.0 1.0
HB2 A:PRO56 4.9 6.2 1.0
C A:TRP57 4.9 4.1 1.0
NZ A:LYS209 5.0 7.8 1.0
HD1 A:HIS139 5.0 10.0 1.0
HZ2 A:LYS209 5.0 11.7 1.0

Chlorine binding site 2 out of 2 in 6jgh

Go back to Chlorine Binding Sites List in 6jgh
Chlorine binding site 2 out of 2 in the Crystal Structure of the F99S/M153T/V163A/T203I Variant of Gfp at 0.94 A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the F99S/M153T/V163A/T203I Variant of Gfp at 0.94 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:6.9
occ:0.41
CL A:CL301 0.0 6.9 0.4
CL A:CL301 0.6 18.1 0.3
O A:HOH634 2.0 9.2 0.3
H A:TRP57 2.4 5.4 1.0
O A:HOH654 2.8 11.3 0.8
HD1 A:TRP57 2.9 5.8 1.0
O A:HOH546 2.9 11.2 1.0
O A:HOH615 3.0 11.3 1.0
HA A:PRO56 3.0 5.7 1.0
HD3 A:PRO58 3.1 5.5 1.0
HB2 A:TRP57 3.1 5.5 1.0
O A:HOH634 3.1 11.1 0.5
N A:TRP57 3.1 4.5 1.0
O A:HOH654 3.2 11.9 0.2
HD1 A:TYR143 3.3 7.7 1.0
HB3 A:PRO56 3.5 6.2 1.0
HD2 A:PRO58 3.6 5.5 1.0
CD1 A:TRP57 3.6 4.8 1.0
CA A:PRO56 3.7 4.8 1.0
CD A:PRO58 3.8 4.6 1.0
CB A:TRP57 3.8 4.5 1.0
C A:PRO56 3.9 4.2 1.0
CA A:TRP57 4.0 4.1 1.0
CB A:PRO56 4.1 5.2 1.0
CG A:TRP57 4.1 4.2 1.0
CD1 A:TYR143 4.1 6.5 1.0
O A:HOH762 4.1 25.3 0.7
O A:HOH597 4.3 12.9 0.6
HE1 A:TYR143 4.4 7.4 1.0
HD1 A:HIS139 4.4 10.0 1.0
O A:HOH550 4.4 17.9 0.1
O A:HOH600 4.4 7.2 1.0
O A:HOH781 4.5 33.3 0.7
HZ1 A:LYS209 4.5 11.7 1.0
H1 A:HOH600 4.5 10.7 1.0
HB2 A:TYR143 4.5 7.9 1.0
HB2 A:PRO56 4.6 6.2 1.0
HB3 A:TRP57 4.6 5.5 1.0
CE1 A:TYR143 4.7 6.2 1.0
HA A:TRP57 4.8 5.0 1.0
N A:PRO58 4.8 4.2 1.0
NE1 A:TRP57 4.8 5.1 1.0
O A:HOH854 4.8 23.6 0.8
HG2 A:PRO58 4.9 6.1 1.0
CG A:PRO58 4.9 5.1 1.0
HA A:TYR143 5.0 7.0 1.0
C A:TRP57 5.0 4.1 1.0
O A:VAL55 5.0 5.4 1.0

Reference:

K.Takaba, Y.Tai, H.Eki, H.A.Dao, Y.Hanazono, K.Hasegawa, K.Miki, K.Takeda. Subatomic Resolution X-Ray Structures of Green Fluorescent Protein. Iucrj V. 6 387 2019.
ISSN: ESSN 2052-2525
PubMed: 31098020
DOI: 10.1107/S205225251900246X
Page generated: Sat Jul 12 16:02:05 2025

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