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Chlorine in PDB 6jj1: Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues

Enzymatic activity of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues

All present enzymatic activity of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues:
3.1.1.29;

Protein crystallography data

The structure of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues, PDB code: 6jj1 was solved by N.Iqbal, P.Sharma, A.Chaudhary, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.08 / 0.97
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.986, 66.131, 76.103, 90.00, 90.00, 90.00
R / Rfree (%) 13.4 / 16.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues (pdb code 6jj1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues, PDB code: 6jj1:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6jj1

Go back to Chlorine Binding Sites List in 6jj1
Chlorine binding site 1 out of 3 in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:13.2
occ:0.60
 HH11 A:ARG131 2.2 7.7 1.0
HE2 A:HIS94 2.2 7.9 1.0
HG2 A:ARG131 2.7 6.5 1.0
HD3 A:ARG131 2.8 7.3 1.0
O A:HOH356 2.9 22.7 1.0
NE2 A:HIS94 2.9 6.9 1.0
NH1 A:ARG131 3.0 7.9 1.0
HB2 A:ARG131 3.2 7.0 1.0
HG2 A:ARG133 3.2 9.5 1.0
HB3 A:ARG131 3.2 7.0 1.0
CG A:ARG131 3.2 6.4 1.0
HD2 A:ARG133 3.3 12.5 1.0
HD3 A:LYS107 3.3 17.5 1.0
HD12 A:LEU118 3.3 9.7 1.0
HH12 A:ARG131 3.4 7.7 1.0
CB A:ARG131 3.4 6.3 1.0
HD13 A:LEU118 3.4 9.7 1.0
HE1 A:HIS94 3.4 7.8 1.0
CD A:ARG131 3.4 7.1 1.0
CE1 A:HIS94 3.5 6.9 1.0
HE A:ARG133 3.8 15.9 1.0
CD1 A:LEU118 3.8 9.6 1.0
CD A:ARG133 3.8 10.2 1.0
CG A:ARG133 3.8 7.8 1.0
NE A:ARG133 3.9 12.4 1.0
CZ A:ARG131 4.0 7.2 1.0
HG3 A:ARG133 4.0 9.5 1.0
CD2 A:HIS94 4.1 6.7 1.0
HD11 A:LEU118 4.1 9.7 1.0
HB3 A:LYS107 4.1 12.8 1.0
HG3 A:ARG131 4.2 6.5 1.0
NE A:ARG131 4.2 6.9 1.0
HD2 A:ARG131 4.2 7.3 1.0
CD A:LYS107 4.3 23.8 1.0
HD2 A:HIS94 4.4 7.8 1.0
O A:GLY111 4.4 11.3 1.0
CZ A:ARG133 4.5 16.8 1.0
HZ3 A:LYS107 4.5 25.3 1.0
HD2 A:LYS107 4.6 17.4 1.0
OE1 A:GLU96 4.6 9.8 1.0
HG2 A:LYS107 4.6 16.1 1.0
HD3 A:ARG133 4.7 12.6 1.0
ND1 A:HIS94 4.8 6.9 1.0
CG A:LYS107 4.8 13.4 1.0
CB A:LYS107 4.9 10.6 1.0
HH21 A:ARG133 4.9 16.5 1.0
HD22 A:LEU118 4.9 8.1 1.0
CA A:ARG131 4.9 5.8 1.0
NH2 A:ARG133 5.0 26.7 1.0
O A:GLY109 5.0 12.7 1.0

Chlorine binding site 2 out of 3 in 6jj1

Go back to Chlorine Binding Sites List in 6jj1
Chlorine binding site 2 out of 3 in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:11.0
occ:0.80
 HD21 A:ASN12 2.5 9.8 1.0
HD2 A:HIS22 2.8 8.8 1.0
HB3 A:MET69 2.9 8.7 1.0
O A:HOH414 3.2 26.6 1.0
O A:HOH413 3.2 14.2 1.0
HD22 A:LEU150 3.3 14.3 1.0
O A:HOH521 3.3 34.3 1.0
OD1 A:ASN116 3.4 13.0 1.0
ND2 A:ASN12 3.4 9.9 1.0
CD2 A:HIS22 3.5 9.1 1.0
HD21 A:ASN116 3.6 10.4 1.0
NE2 A:HIS22 3.7 9.6 1.0
CB A:MET69 3.7 8.6 1.0
HB2 A:MET69 3.8 8.7 1.0
HD22 A:ASN12 3.9 9.8 1.0
HG2 A:MET69 4.0 9.4 1.0
HD12 A:LEU150 4.0 16.9 1.0
ND2 A:ASN116 4.1 9.6 1.0
CG A:ASN116 4.2 10.0 1.0
CD2 A:LEU150 4.2 14.3 1.0
OD1 A:ASN12 4.2 9.6 1.0
CG A:ASN12 4.3 9.3 1.0
H A:MET69 4.3 8.9 1.0
CG A:MET69 4.4 8.1 1.0
H A:ASN70 4.5 9.3 1.0
HD23 A:LEU150 4.6 14.3 1.0
HD21 A:LEU150 4.7 14.3 1.0
CG A:HIS22 4.7 8.1 1.0
HD22 A:ASN116 4.8 10.4 1.0
HG3 A:MET69 4.8 9.4 1.0
CD1 A:LEU150 4.8 17.2 1.0
HG23 A:VAL149 4.9 12.0 1.0
HG A:LEU150 4.9 13.9 1.0
O A:HOH489 4.9 32.3 1.0
CA A:MET69 4.9 8.4 1.0
N A:MET69 4.9 8.8 1.0
CG A:LEU150 4.9 13.9 1.0
HB3 A:ASN70 5.0 14.0 1.0

Chlorine binding site 3 out of 3 in 6jj1

Go back to Chlorine Binding Sites List in 6jj1
Chlorine binding site 3 out of 3 in the Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:16.6
occ:0.70
 HH11 A:ARG133 2.5 16.4 1.0
HD2 A:ARG105 2.8 35.7 1.0
HB2 A:LYS107 3.0 12.8 1.0
O A:HOH305 3.1 21.9 1.0
HD3 A:ARG133 3.2 12.6 1.0
HB3 A:ARG105 3.2 14.9 1.0
NH1 A:ARG133 3.2 20.4 1.0
HD2 A:LYS107 3.3 17.4 1.0
HH11 A:ARG105 3.4 53.9 1.0
HH12 A:ARG133 3.5 16.4 1.0
HB2 A:ARG105 3.6 14.8 1.0
CD A:ARG105 3.7 53.7 1.0
CB A:ARG105 3.8 10.8 1.0
CB A:LYS107 3.9 10.6 1.0
HD3 A:ARG105 4.0 35.8 1.0
CD A:ARG133 4.0 10.2 1.0
HD2 A:ARG133 4.0 12.5 1.0
HG3 A:LYS107 4.2 16.2 1.0
CD A:LYS107 4.2 23.8 1.0
NH1 A:ARG105 4.2 63.3 1.0
CZ A:ARG133 4.3 16.8 1.0
CG A:LYS107 4.3 13.4 1.0
CG A:ARG105 4.4 19.2 1.0
HA A:LYS107 4.4 8.3 1.0
NE A:ARG133 4.5 12.4 1.0
HB3 A:LYS107 4.6 12.8 1.0
HD21 A:ASN188 4.6 13.1 1.0
O A:LEU106 4.6 10.6 1.0
CA A:LYS107 4.6 8.3 1.0
O A:HOH334 4.8 28.2 1.0
HG3 A:ARG105 4.8 14.3 1.0
NE A:ARG105 4.8 67.2 1.0
HH12 A:ARG105 4.8 54.1 1.0
HE3 A:LYS107 4.8 21.2 1.0
HD3 A:LYS107 4.8 17.5 1.0
HZ1 A:LYS107 4.9 25.3 1.0
C A:LEU106 4.9 7.2 1.0
N A:LYS107 4.9 7.0 1.0
CZ A:ARG105 4.9 79.3 1.0

Reference:

N.Iqbal, P.Sharma, A.Chaudhary, S.Sharma, T.P.Singh. Crystal Structure of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 0.97 A Resolution with Disordered Five N-Terminal Residues To Be Published.
Page generated: Sat Jul 12 16:03:44 2025

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