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Chlorine in PDB 6jxp: Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography

Enzymatic activity of Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography

All present enzymatic activity of Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography:
3.2.1.17;

Protein crystallography data

The structure of Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography, PDB code: 6jxp was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.44 / 1.56
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.410, 78.410, 37.930, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography (pdb code 6jxp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography, PDB code: 6jxp:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6jxp

Go back to Chlorine Binding Sites List in 6jxp
Chlorine binding site 1 out of 2 in the Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:28.2
occ:1.00
HD22 A:ASN131 2.4 28.4 1.0
HB2 A:ASN131 2.8 25.1 1.0
HA A:ALA128 3.0 23.5 1.0
HG12 A:VAL127 3.0 30.0 0.6
ND2 A:ASN131 3.3 23.7 1.0
O A:HOH354 3.4 29.5 1.0
HG23 A:VAL127 3.5 32.1 0.4
CB A:ASN131 3.6 20.9 1.0
HB3 A:ASN131 3.6 25.1 1.0
HD2 A:ARG132 3.7 31.4 1.0
HG3 A:ARG132 3.8 30.6 1.0
HD21 A:ASN131 3.9 28.4 1.0
O A:VAL127 3.9 21.8 0.4
CA A:ALA128 3.9 19.6 1.0
CG A:ASN131 3.9 23.5 1.0
O A:VAL127 4.0 21.7 0.6
CG1 A:VAL127 4.0 25.0 0.6
C A:VAL127 4.2 19.0 0.4
HB2 A:ALA128 4.2 30.8 1.0
C A:VAL127 4.2 19.0 0.6
N A:ALA128 4.2 19.2 1.0
HG11 A:VAL127 4.3 30.0 0.6
HG13 A:VAL127 4.3 30.0 0.6
CD A:ARG132 4.4 26.2 1.0
CG2 A:VAL127 4.4 26.8 0.4
HB A:VAL127 4.4 31.5 0.4
CG A:ARG132 4.5 25.5 1.0
CB A:ALA128 4.5 25.7 1.0
HD3 A:ARG132 4.6 31.4 1.0
H A:ASN131 4.7 23.3 1.0
HB1 A:ALA128 4.7 30.8 1.0
HB A:VAL127 4.7 30.9 0.6
H A:ALA128 4.8 23.0 1.0
HG21 A:VAL127 4.8 32.1 0.4
HG2 A:ARG132 4.8 30.6 1.0
CB A:VAL127 4.9 25.7 0.6
CA A:ASN131 4.9 19.4 1.0
CB A:VAL127 4.9 26.2 0.4
HH11 A:ARG132 4.9 29.8 1.0
C A:ALA128 4.9 20.7 1.0
HG22 A:VAL127 5.0 32.1 0.4

Chlorine binding site 2 out of 2 in 6jxp

Go back to Chlorine Binding Sites List in 6jxp
Chlorine binding site 2 out of 2 in the Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room Temperature Structure of Lysozyme Delivered in Lcp By Serial Millisecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:35.7
occ:1.00
H A:GLY44 2.2 26.3 1.0
HA A:GLN139 2.8 35.5 1.0
HB2 A:SER42 2.8 30.9 1.0
HG A:SER42 2.8 32.8 1.0
HA3 A:GLY44 3.0 22.2 1.0
O A:HOH373 3.0 50.7 1.0
N A:GLY44 3.0 21.9 1.0
OG A:SER42 3.1 27.3 1.0
HD11 A:ILE142 3.3 59.2 1.0
CB A:SER42 3.4 25.7 1.0
HG2 A:GLN139 3.5 70.8 1.0
CA A:GLY44 3.5 18.5 1.0
HD13 A:ILE142 3.5 59.2 1.0
HG23 A:VAL138 3.5 32.9 1.0
CA A:GLN139 3.6 29.6 1.0
HG12 A:ILE142 3.6 34.4 1.0
HB2 A:GLN139 3.7 46.4 1.0
CD1 A:ILE142 3.8 49.4 1.0
H A:LEU43 3.9 27.8 1.0
N A:LEU43 4.0 23.2 1.0
N A:GLN139 4.0 30.2 1.0
CB A:GLN139 4.0 38.7 1.0
HB3 A:SER42 4.1 30.9 1.0
HA2 A:GLY44 4.1 22.2 1.0
C A:SER42 4.1 25.8 1.0
CG A:GLN139 4.2 59.0 1.0
C A:LEU43 4.2 19.9 1.0
HB3 A:LEU43 4.2 29.0 1.0
H A:ASN45 4.2 20.4 1.0
CG1 A:ILE142 4.2 28.6 1.0
O A:VAL138 4.3 26.7 1.0
H A:GLN139 4.3 36.2 1.0
C A:VAL138 4.3 26.7 1.0
CA A:SER42 4.4 23.4 1.0
CG2 A:VAL138 4.4 27.4 1.0
HG3 A:GLN139 4.5 70.8 1.0
CA A:LEU43 4.5 22.4 1.0
C A:GLY44 4.6 18.1 1.0
O A:SER42 4.6 21.8 1.0
HG21 A:VAL138 4.6 32.9 1.0
HD12 A:ILE142 4.7 59.2 1.0
HG13 A:ILE142 4.7 34.4 1.0
N A:ASN45 4.7 17.0 1.0
C A:GLN139 4.8 27.0 1.0
CB A:LEU43 4.9 24.2 1.0
HB A:VAL138 4.9 35.8 1.0
HA A:SER42 4.9 28.0 1.0
HG23 A:ILE142 5.0 33.0 1.0
HB3 A:GLN139 5.0 46.4 1.0
O A:GLN139 5.0 29.3 1.0
HG21 A:ILE142 5.0 33.0 1.0

Reference:

K.H.Nam, K.H.Nam. N/A N/A.
Page generated: Sat Jul 12 16:11:49 2025

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