Chlorine in PDB 6jy8: Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-3%) at 95K.

The structure of Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-3%) at 95K., PDB code: 6jy8 was solved by J.H.Yun, M.Ohki, S.Y.Park, W.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.94 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.603, 49.148, 69.186, 90.00, 110.06, 90.00
R / Rfree (%)	17.3 / 21.1

The binding sites of Chlorine atom in the Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-3%) at 95K. (pdb code 6jy8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-3%) at 95K., PDB code: 6jy8:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-3%) at 95K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-3%) at 95K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:23.4 occ:1.00 NZ A:LYS235 3.2 20.9 1.0 OD1 A:ASN98 3.2 35.9 1.0 OG1 A:THR102 3.3 41.4 1.0 CG2 A:THR102 3.4 14.8 1.0 CE A:LYS235 3.6 12.9 1.0 O A:HOH450 3.7 14.7 1.0 CD1 A:TRP99 3.7 12.7 1.0 CB A:THR102 3.8 14.7 1.0 NE1 A:TRP99 4.1 11.2 1.0 CA A:ALA61 4.1 14.8 1.0 CB A:ALA61 4.2 9.1 1.0 CG A:ASN98 4.2 18.8 1.0 CG2 A:ILE64 4.2 23.9 1.0 C15 A:RET301 4.2 17.1 1.0 CB A:ASN98 4.4 13.4 1.0 C14 A:RET301 4.5 16.0 1.0 CD A:LYS235 4.5 12.3 1.0 N A:ALA61 4.7 14.7 1.0 C A:ASN98 4.7 16.8 1.0 O A:ASN98 4.8 17.1 1.0 N A:TRP99 4.8 14.3 1.0 CG A:TRP99 5.0 13.1 1.0

Chlorine binding site 2 out of 2 in the Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-3%) at 95K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-3%) at 95K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:36.5 occ:1.00 O A:HOH490 2.6 46.4 1.0 N A:LYS46 3.2 19.5 1.0 CD A:PRO45 3.5 17.1 1.0 CG A:LYS46 3.5 25.4 1.0 CB A:LYS46 3.6 28.9 1.0 N A:PRO45 3.7 15.6 1.0 CB A:ALA44 3.8 17.3 1.0 CB A:PRO45 3.9 22.5 1.0 CG A:PRO45 4.0 27.9 1.0 CA A:LYS46 4.0 20.6 1.0 C A:PRO45 4.1 22.1 1.0 CA A:PRO45 4.1 16.9 1.0 CD A:LYS46 4.2 39.9 1.0 C A:ALA44 4.2 22.4 1.0 CA A:ALA44 4.5 17.3 1.0 O A:ALA44 5.0 17.2 1.0

J.H.Yun, M.Ohki, J.H.Park, N.Ishimoto, A.Sato-Tomita, W.Lee, Z.Jin, J.R.H.Tame, N.Shibayama, S.Y.Park, W.Lee. Pumping Mechanism of Nm-R3, A Light-Driven Bacterial Chloride Importer in the Rhodopsin Family. Sci Adv V. 6 Y2042 2020.
ISSN: ESSN 2375-2548
PubMed: 32083178
DOI: 10.1126/SCIADV.AAY2042