Chlorine in PDB 6jyb: Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-10%) at 95K.

The structure of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-10%) at 95K., PDB code: 6jyb was solved by J.H.Yun, M.Ohki, S.Y.Park, W.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.56 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.770, 49.086, 69.302, 90.00, 109.99, 90.00
R / Rfree (%)	16.8 / 19.4

The binding sites of Chlorine atom in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-10%) at 95K. (pdb code 6jyb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-10%) at 95K., PDB code: 6jyb:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-10%) at 95K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-10%) at 95K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:27.0 occ:1.00 NZ A:LYS235 3.2 25.3 1.0 OD1 A:ASN98 3.2 39.2 1.0 OG1 A:THR102 3.4 35.3 1.0 CG2 A:THR102 3.5 21.1 1.0 CE A:LYS235 3.6 26.6 1.0 O A:HOH447 3.6 19.6 1.0 CD1 A:TRP99 3.7 13.1 1.0 CB A:THR102 3.8 18.9 1.0 NE1 A:TRP99 4.1 12.9 1.0 CA A:ALA61 4.1 15.4 1.0 CG A:ASN98 4.2 24.8 1.0 CG2 A:ILE64 4.2 24.3 1.0 CB A:ALA61 4.2 16.5 1.0 C15 A:RET301 4.2 16.0 1.0 CB A:ASN98 4.3 14.7 1.0 C14 A:RET301 4.5 23.6 1.0 CD A:LYS235 4.5 20.7 1.0 N A:ALA61 4.7 14.6 1.0 C A:ASN98 4.7 18.8 1.0 O A:ASN98 4.8 16.3 1.0 N A:TRP99 4.8 16.3 1.0

Chlorine binding site 2 out of 2 in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-10%) at 95K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-10%) at 95K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:35.9 occ:1.00 O A:HOH492 2.6 41.6 1.0 N A:LYS46 3.2 17.2 1.0 CD A:PRO45 3.5 14.5 1.0 CG A:LYS46 3.5 24.5 1.0 CB A:LYS46 3.5 20.3 1.0 N A:PRO45 3.6 17.0 1.0 CB A:ALA44 3.8 16.3 1.0 CB A:PRO45 3.9 22.8 1.0 CA A:LYS46 3.9 20.8 1.0 CG A:PRO45 4.0 27.4 1.0 C A:PRO45 4.1 18.8 1.0 CA A:PRO45 4.1 17.5 1.0 C A:ALA44 4.2 22.9 1.0 CD A:LYS46 4.2 39.4 1.0 CA A:ALA44 4.5 21.0 1.0 O A:ALA44 4.9 17.4 1.0

J.H.Yun, M.Ohki, J.H.Park, N.Ishimoto, A.Sato-Tomita, W.Lee, Z.Jin, J.R.H.Tame, N.Shibayama, S.Y.Park, W.Lee. Pumping Mechanism of Nm-R3, A Light-Driven Bacterial Chloride Importer in the Rhodopsin Family. Sci Adv V. 6 Y2042 2020.
ISSN: ESSN 2375-2548
PubMed: 32083178
DOI: 10.1126/SCIADV.AAY2042