Chlorine in PDB 6jyd: Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-30%) at 95K.

The structure of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-30%) at 95K., PDB code: 6jyd was solved by J.H.Yun, M.Ohki, S.Y.Park, W.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.31 / 2.01
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.783, 49.285, 69.334, 90.00, 110.03, 90.00
R / Rfree (%)	16.3 / 20.4

The binding sites of Chlorine atom in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-30%) at 95K. (pdb code 6jyd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-30%) at 95K., PDB code: 6jyd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-30%) at 95K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-30%) at 95K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:29.6 occ:1.00 OD1 A:ASN98 3.1 51.0 1.0 OG1 A:THR102 3.2 36.2 1.0 NZ A:LYS235 3.3 30.3 1.0 CG2 A:THR102 3.4 23.6 1.0 CE A:LYS235 3.6 36.7 1.0 CD1 A:TRP99 3.7 18.6 1.0 CB A:THR102 3.7 21.1 1.0 O A:HOH442 3.8 25.7 1.0 CG A:ASN98 4.1 35.2 1.0 NE1 A:TRP99 4.1 15.0 1.0 CB A:ALA61 4.1 19.1 1.0 CA A:ALA61 4.1 18.4 1.0 CB A:ASN98 4.3 19.9 1.0 C15 A:RET301 4.3 25.2 1.0 CG2 A:ILE64 4.3 33.5 1.0 CD A:LYS235 4.6 24.2 1.0 C14 A:RET301 4.6 23.1 1.0 C A:ASN98 4.6 20.4 1.0 O A:ASN98 4.6 17.6 1.0 N A:ALA61 4.7 19.2 1.0 N A:TRP99 4.8 18.9 1.0 CA A:TRP99 5.0 18.2 1.0 CG A:TRP99 5.0 15.8 1.0

Chlorine binding site 2 out of 2 in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-30%) at 95K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Cw Laser (Nd-30%) at 95K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:40.7 occ:1.00 O A:HOH487 2.6 48.7 1.0 N A:LYS46 3.3 25.4 1.0 CD A:PRO45 3.4 17.9 1.0 CG A:LYS46 3.5 35.6 1.0 CB A:LYS46 3.6 33.5 1.0 N A:PRO45 3.7 21.8 1.0 CB A:ALA44 3.7 19.1 1.0 CB A:PRO45 3.9 32.7 1.0 CG A:PRO45 4.0 30.6 1.0 CA A:LYS46 4.0 33.5 1.0 CD A:LYS46 4.2 44.0 1.0 CA A:PRO45 4.2 27.4 1.0 C A:PRO45 4.2 25.2 1.0 C A:ALA44 4.2 27.8 1.0 CA A:ALA44 4.5 21.5 1.0 O A:ALA44 5.0 22.9 1.0

J.H.Yun, M.Ohki, J.H.Park, N.Ishimoto, A.Sato-Tomita, W.Lee, Z.Jin, J.R.H.Tame, N.Shibayama, S.Y.Park, W.Lee. Pumping Mechanism of Nm-R3, A Light-Driven Bacterial Chloride Importer in the Rhodopsin Family. Sci Adv V. 6 Y2042 2020.
ISSN: ESSN 2375-2548
PubMed: 32083178
DOI: 10.1126/SCIADV.AAY2042