Chlorine in PDB 6jye: Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K.

The structure of Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K., PDB code: 6jye was solved by J.H.Yun, M.Ohki, S.Y.Park, W.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.05 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.772, 49.289, 69.419, 90.00, 110.00, 90.00
R / Rfree (%)	16.5 / 19.8

The binding sites of Chlorine atom in the Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K. (pdb code 6jye). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K., PDB code: 6jye:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:27.0 occ:1.00 NZ A:LYS235 3.2 22.9 1.0 OD1 A:ASN98 3.2 43.1 1.0 OG1 A:THR102 3.3 33.3 1.0 CG2 A:THR102 3.4 22.7 1.0 O A:HOH437 3.6 16.4 1.0 CE A:LYS235 3.6 20.4 1.0 CD1 A:TRP99 3.7 12.2 1.0 CB A:THR102 3.8 14.4 1.0 NE1 A:TRP99 4.0 12.9 1.0 CG A:ASN98 4.1 31.2 1.0 CB A:ALA61 4.2 15.1 1.0 CA A:ALA61 4.2 17.6 1.0 C15 A:RET301 4.2 16.5 1.0 CG2 A:ILE64 4.3 27.6 1.0 CB A:ASN98 4.3 16.8 1.0 C14 A:RET301 4.5 21.5 1.0 CD A:LYS235 4.5 19.9 1.0 O A:ASN98 4.7 15.8 1.0 C A:ASN98 4.7 20.2 1.0 N A:ALA61 4.7 14.7 1.0 N A:TRP99 4.8 14.4 1.0 CG A:TRP99 4.9 16.6 1.0

Chlorine binding site 2 out of 2 in the Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Dark-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:38.7 occ:1.00 O A:HOH493 2.6 41.7 1.0 N A:LYS46 3.3 18.8 1.0 CD A:PRO45 3.4 16.9 1.0 CG A:LYS46 3.5 29.8 1.0 CB A:LYS46 3.6 32.8 1.0 N A:PRO45 3.7 19.9 1.0 CB A:ALA44 3.8 18.3 1.0 CB A:PRO45 3.9 29.7 1.0 CG A:PRO45 3.9 23.0 1.0 CA A:LYS46 4.0 23.6 1.0 CA A:PRO45 4.1 20.0 1.0 C A:PRO45 4.1 19.5 1.0 CD A:LYS46 4.2 40.0 1.0 C A:ALA44 4.2 20.6 1.0 CA A:ALA44 4.5 15.9 1.0 O A:ALA44 5.0 19.7 1.0

J.H.Yun, M.Ohki, J.H.Park, N.Ishimoto, A.Sato-Tomita, W.Lee, Z.Jin, J.R.H.Tame, N.Shibayama, S.Y.Park, W.Lee. Pumping Mechanism of Nm-R3, A Light-Driven Bacterial Chloride Importer in the Rhodopsin Family. Sci Adv V. 6 Y2042 2020.
ISSN: ESSN 2375-2548
PubMed: 32083178
DOI: 10.1126/SCIADV.AAY2042