Chlorine in PDB 6jyf: Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K.

The structure of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K., PDB code: 6jyf was solved by J.H.Yun, M.Ohki, S.Y.Park, W.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.07 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.918, 49.289, 69.466, 90.00, 109.98, 90.00
R / Rfree (%)	16.2 / 21.3

The binding sites of Chlorine atom in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K. (pdb code 6jyf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K., PDB code: 6jyf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:32.5 occ:1.00 OD1 A:ASN98 3.1 44.4 1.0 OG1 A:THR102 3.3 34.1 1.0 NZ A:LYS235 3.4 27.5 1.0 CG2 A:THR102 3.4 27.1 1.0 CE A:LYS235 3.7 32.6 1.0 CD1 A:TRP99 3.7 13.1 1.0 O A:HOH434 3.8 21.5 1.0 CB A:THR102 3.8 15.3 1.0 CG A:ASN98 4.0 35.6 1.0 NE1 A:TRP99 4.1 13.2 1.0 CA A:ALA61 4.1 13.3 1.0 CB A:ALA61 4.2 22.0 1.0 CG2 A:ILE64 4.3 39.8 1.0 CB A:ASN98 4.3 17.5 1.0 C15 A:RET301 4.3 25.9 1.0 CD A:LYS235 4.6 22.5 1.0 C14 A:RET301 4.6 24.3 1.0 N A:ALA61 4.6 13.2 1.0 C A:ASN98 4.7 22.1 1.0 O A:ASN98 4.7 16.0 1.0 N A:TRP99 4.8 17.5 1.0 CG A:TRP99 5.0 16.2 1.0

Chlorine binding site 2 out of 2 in the Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Light-State Marine Bacterial Chloride Importer, Nm-R3, with Pulse Laser (Nd-1%) at 140K. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:40.0 occ:1.00 O A:HOH485 2.6 45.1 1.0 N A:LYS46 3.3 24.4 1.0 CD A:PRO45 3.4 17.6 1.0 CG A:LYS46 3.5 35.5 1.0 CB A:LYS46 3.6 30.6 1.0 N A:PRO45 3.7 20.9 1.0 CB A:ALA44 3.8 18.1 1.0 CB A:PRO45 3.9 28.8 1.0 CG A:PRO45 4.0 26.2 1.0 CA A:LYS46 4.0 29.8 1.0 C A:PRO45 4.2 21.6 1.0 CA A:PRO45 4.2 21.2 1.0 CD A:LYS46 4.2 41.8 1.0 C A:ALA44 4.3 26.2 1.0 CA A:ALA44 4.6 21.6 1.0

J.H.Yun, M.Ohki, J.H.Park, N.Ishimoto, A.Sato-Tomita, W.Lee, Z.Jin, J.R.H.Tame, N.Shibayama, S.Y.Park, W.Lee. Pumping Mechanism of Nm-R3, A Light-Driven Bacterial Chloride Importer in the Rhodopsin Family. Sci Adv V. 6 Y2042 2020.
ISSN: ESSN 2375-2548
PubMed: 32083178
DOI: 10.1126/SCIADV.AAY2042