Chlorine in PDB 6jzi: Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure

All present enzymatic activity of Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure:
3.2.1.17;

The structure of Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure, PDB code: 6jzi was solved by E.Nango, M.Sugahara, T.Nakane, T.Tanaka, S.Iwata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.27 / 2.00
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.110, 79.110, 38.020, 90.00, 90.00, 90.00
R / Rfree (%)	15.9 / 20.2

The structure of Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure (pdb code 6jzi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure, PDB code: 6jzi:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:29.1 occ:1.00 OH A:TYR23 3.0 21.7 1.0 CE2 A:TYR23 3.7 21.2 1.0 CZ A:TYR23 3.7 20.1 1.0 CA A:GLY104 4.1 21.3 1.0 O A:ARG21 4.6 24.4 1.0 N A:GLY104 4.7 21.5 1.0 O A:HOH301 4.7 29.4 1.0 CD2 A:TYR23 4.9 19.9 1.0 CE1 A:TYR23 4.9 22.0 1.0

Chlorine binding site 2 out of 2 in the Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hen Egg-White Lysozyme Obtained From Sfx Experiments Under Atmospheric Pressure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:39.9 occ:1.00 N A:GLY26 2.9 19.5 1.0 O A:HOH356 3.0 48.8 1.0 OG A:SER24 3.0 29.9 1.0 CA A:GLY26 3.4 20.2 1.0 CB A:SER24 3.5 27.4 1.0 CA A:GLN121 3.7 28.2 1.0 CD1 A:ILE124 3.8 43.6 1.0 N A:LEU25 3.9 24.1 1.0 N A:GLN121 4.0 29.6 1.0 C A:LEU25 4.1 22.5 1.0 C A:SER24 4.1 29.4 1.0 CB A:GLN121 4.1 41.6 1.0 O A:VAL120 4.2 26.0 1.0 CG2 A:VAL120 4.2 23.2 1.0 CG1 A:ILE124 4.3 33.3 1.0 C A:VAL120 4.3 29.6 1.0 CG A:GLN121 4.3 50.1 1.0 CA A:SER24 4.5 21.4 1.0 CA A:LEU25 4.5 23.9 1.0 C A:GLY26 4.5 20.6 1.0 O A:SER24 4.6 22.5 1.0 N A:ASN27 4.6 17.9 1.0 CB A:LEU25 4.8 25.6 1.0 C A:GLN121 4.8 27.9 1.0

Y.Shimazu, K.Tono, T.Tanaka, Y.Yamanaka, T.Nakane, C.Mori, K.T.Kimura, T.Fujiwara, M.Sugahara, R.Tanaka, R.B.Doak, T.Shimamura, S.Iwata, E.Nango, M.Yabashi. High-Viscosity Sample-Injection Device For Serial Femtosecond Crystallography at Atmospheric Pressure J.Appl.Crystallogr. V. 52 2019.
ISSN: ESSN 1600-5767
DOI: 10.1107/S1600576719012846