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Chlorine in PDB 6k3e: LSD1/Co-Rest Structure with An Inhibitor

Protein crystallography data

The structure of LSD1/Co-Rest Structure with An Inhibitor, PDB code: 6k3e was solved by J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 76.46 / 2.87
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 121.510, 179.440, 234.410, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 22.9

Other elements in 6k3e:

The structure of LSD1/Co-Rest Structure with An Inhibitor also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the LSD1/Co-Rest Structure with An Inhibitor (pdb code 6k3e). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the LSD1/Co-Rest Structure with An Inhibitor, PDB code: 6k3e:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6k3e

Go back to Chlorine Binding Sites List in 6k3e
Chlorine binding site 1 out of 2 in the LSD1/Co-Rest Structure with An Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of LSD1/Co-Rest Structure with An Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl927

b:0.9
occ:1.00
O A:GLN652 3.7 90.6 1.0
O A:MET654 4.3 86.9 1.0
NZ A:LYS631 4.3 79.6 1.0
O A:ARG653 4.7 91.8 1.0
C A:GLN652 4.9 85.8 1.0
OH A:TYR763 5.0 73.0 1.0

Chlorine binding site 2 out of 2 in 6k3e

Go back to Chlorine Binding Sites List in 6k3e
Chlorine binding site 2 out of 2 in the LSD1/Co-Rest Structure with An Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of LSD1/Co-Rest Structure with An Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl928

b:0.2
occ:1.00
S1 A:DTT902 3.5 0.8 1.0

Reference:

W.Jiang, J.Wang. N/A N/A.
Page generated: Sat Jul 12 16:13:56 2025

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