Chlorine in PDB 6kcb: Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography

All present enzymatic activity of Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography:
3.2.1.17;

The structure of Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography, PDB code: 6kcb was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.18 / 1.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.450, 79.450, 38.470, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 20.5

The structure of Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Chlorine atom in the Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography (pdb code 6kcb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography, PDB code: 6kcb:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:37.3 occ:1.00 OH A:TYR41 3.0 30.0 1.0 NA A:NA204 3.4 43.3 1.0 CE2 A:TYR41 3.7 29.3 1.0 CZ A:TYR41 3.7 29.4 1.0 CA A:GLY122 4.0 32.1 1.0 N A:GLY122 4.6 32.8 1.0 O A:HOH307 4.7 40.6 1.0 O A:ARG39 4.7 37.1 1.0 CD2 A:TYR41 4.9 29.9 1.0 CE1 A:TYR41 5.0 29.8 1.0

Chlorine binding site 2 out of 2 in the Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room Temperature Structure of Lysozyme Delivered in Shortening A By Serial Millisecond Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:47.7 occ:1.00 OG A:SER42 3.0 37.0 1.0 N A:GLY44 3.1 30.9 1.0 CA A:GLY44 3.4 31.5 1.0 CB A:SER42 3.5 36.0 1.0 CA A:GLN139 3.6 41.4 1.0 CD1 A:ILE142 3.9 47.1 1.0 CB A:GLN139 3.9 45.2 1.0 N A:GLN139 4.0 37.7 1.0 N A:LEU43 4.1 30.6 1.0 C A:SER42 4.3 34.0 1.0 C A:LEU43 4.3 30.8 1.0 CG1 A:ILE142 4.3 41.0 1.0 C A:VAL138 4.3 37.6 1.0 CG A:GLN139 4.4 52.3 1.0 O A:VAL138 4.4 35.6 1.0 CG2 A:VAL138 4.4 35.8 1.0 CA A:SER42 4.5 31.6 1.0 C A:GLY44 4.5 30.6 1.0 CA A:LEU43 4.6 29.9 1.0 O A:SER42 4.7 33.1 1.0 N A:ASN45 4.7 28.5 1.0 C A:GLN139 4.8 41.1 1.0 CB A:LEU43 5.0 36.2 1.0

K.H.Nam, K.H.Nam. N/A N/A.
ISSN: ESSN 2045-2322
PubMed: 31919476
DOI: 10.1038/S41598-019-56135-1