Chlorine in PDB 6kcd: Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography

All present enzymatic activity of Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography:
3.2.1.17;

The structure of Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography, PDB code: 6kcd was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.99 / 1.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.450, 79.450, 38.470, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 20.7

The structure of Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography (pdb code 6kcd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography, PDB code: 6kcd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:41.8 occ:1.00 OH A:TYR41 3.0 34.5 1.0 CZ A:TYR41 3.7 33.5 1.0 CE2 A:TYR41 3.7 34.7 1.0 CA A:GLY122 4.1 35.4 1.0 N A:GLY122 4.7 35.0 1.0 O A:ARG39 4.7 40.0 1.0 O A:HOH306 4.7 45.8 1.0 CE1 A:TYR41 4.9 32.4 1.0 CD2 A:TYR41 5.0 34.3 1.0

Chlorine binding site 2 out of 2 in the Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room Temperature Structure of Lysozyme Delivered in Shortening B By Serial Millisecond Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:49.2 occ:1.00 OG A:SER42 3.0 41.0 1.0 N A:GLY44 3.1 34.8 1.0 CB A:SER42 3.5 36.8 1.0 CA A:GLY44 3.5 34.8 1.0 CA A:GLN139 3.6 43.6 1.0 CD1 A:ILE142 3.9 45.9 1.0 CB A:GLN139 4.0 49.5 1.0 N A:GLN139 4.0 42.2 1.0 N A:LEU43 4.0 36.4 1.0 CG A:GLN139 4.1 56.2 1.0 C A:LEU43 4.2 34.0 1.0 C A:SER42 4.2 37.5 1.0 CG1 A:ILE142 4.3 42.8 1.0 O A:VAL138 4.3 40.1 1.0 C A:VAL138 4.4 42.5 1.0 CG2 A:VAL138 4.4 39.1 1.0 CA A:SER42 4.5 36.8 1.0 C A:GLY44 4.6 34.4 1.0 CA A:LEU43 4.6 35.1 1.0 O A:SER42 4.7 35.1 1.0 N A:ASN45 4.7 32.0 1.0 C A:GLN139 4.8 43.7 1.0 CB A:LEU43 4.9 36.1 1.0

K.H.Nam, K.H.Nam. N/A N/A.
ISSN: ESSN 2045-2322
PubMed: 31919476
DOI: 10.1038/S41598-019-56135-1