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Chlorine in PDB 6ktx: The Wildtype Structure of Eanb

Protein crystallography data

The structure of The Wildtype Structure of Eanb, PDB code: 6ktx was solved by L.Wu, P.H.Liu, J.H.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.15 / 2.19
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 88.583, 111.387, 60.285, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 21.3

Other elements in 6ktx:

The structure of The Wildtype Structure of Eanb also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Wildtype Structure of Eanb (pdb code 6ktx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Wildtype Structure of Eanb, PDB code: 6ktx:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6ktx

Go back to Chlorine Binding Sites List in 6ktx
Chlorine binding site 1 out of 3 in the The Wildtype Structure of Eanb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Wildtype Structure of Eanb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:33.6
occ:1.00
OH A:TYR411 3.0 33.8 1.0
NH1 A:ARG341 3.2 27.4 1.0
N A:ILE362 3.2 30.6 1.0
O A:HOH651 3.4 36.4 1.0
CA A:ARG361 3.4 37.8 1.0
CE2 A:TYR411 3.6 31.1 1.0
CB A:ARG361 3.6 30.0 1.0
SG A:CYS339 3.6 32.8 1.0
CZ A:TYR411 3.8 32.9 1.0
CD A:ARG341 3.8 28.9 1.0
C A:ARG361 3.8 35.0 1.0
CG1 A:ILE362 4.0 35.0 1.0
CB A:ILE362 4.1 30.8 1.0
CA A:ILE362 4.2 32.3 1.0
CZ A:ARG341 4.3 31.4 1.0
CB A:CYS339 4.3 26.9 1.0
NE A:ARG341 4.5 32.0 1.0
O A:GLY360 4.5 34.0 1.0
CE3 A:TRP440 4.6 32.5 1.0
CD1 A:ILE362 4.7 29.4 1.0
N A:ARG361 4.7 35.9 1.0
CB A:TRP440 4.8 28.4 1.0
CD2 A:TYR411 4.9 25.3 1.0
O A:ILE362 4.9 31.6 1.0
CG A:ARG341 5.0 31.8 1.0
CG A:ARG361 5.0 32.3 1.0

Chlorine binding site 2 out of 3 in 6ktx

Go back to Chlorine Binding Sites List in 6ktx
Chlorine binding site 2 out of 3 in the The Wildtype Structure of Eanb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Wildtype Structure of Eanb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:31.4
occ:1.00
O A:HOH700 3.1 34.2 1.0
NH1 A:ARG381 3.2 31.8 1.0
N A:HIS261 3.3 25.8 1.0
N A:ILE262 3.4 28.8 1.0
C A:ALA259 3.5 29.8 1.0
CA A:ALA259 3.5 27.9 1.0
CB A:HIS261 3.7 28.4 1.0
CD1 A:PHE245 3.7 29.4 1.0
NH2 A:ARG381 3.7 30.2 1.0
N A:GLY260 3.7 26.8 1.0
CG1 A:ILE262 3.8 32.2 1.0
CA A:HIS261 3.8 25.8 1.0
O A:ALA259 3.9 28.6 1.0
CZ A:ARG381 3.9 34.6 1.0
CB A:ALA259 3.9 28.0 1.0
C A:HIS261 4.0 28.8 1.0
CB A:PHE245 4.2 30.5 1.0
C A:GLY260 4.3 28.6 1.0
CA A:PHE245 4.4 28.7 1.0
CG A:PHE245 4.4 33.8 1.0
CB A:ILE262 4.5 28.4 1.0
CA A:ILE262 4.5 25.2 1.0
CD1 A:ILE262 4.6 28.7 1.0
CA A:GLY260 4.6 25.1 1.0
CE1 A:PHE245 4.6 34.7 1.0
O A:ALA258 4.8 32.0 1.0
N A:PHE245 4.8 28.1 1.0
N A:ALA259 4.8 30.7 1.0

Chlorine binding site 3 out of 3 in 6ktx

Go back to Chlorine Binding Sites List in 6ktx
Chlorine binding site 3 out of 3 in the The Wildtype Structure of Eanb


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Wildtype Structure of Eanb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:71.6
occ:1.00
NH2 A:ARG157 3.2 61.8 1.0
O A:HOH813 3.5 43.1 1.0
CZ A:ARG157 3.6 65.9 1.0
NE A:ARG157 4.0 60.8 1.0
NH1 A:ARG157 4.3 54.9 1.0
OE1 A:GLN154 4.5 43.5 1.0
CD A:GLN154 4.7 40.0 1.0
CD1 A:LEU426 4.8 31.0 1.0
CG A:LEU426 4.8 26.1 1.0
CG A:ARG157 4.8 29.6 1.0
CD2 A:LEU426 4.8 28.5 1.0

Reference:

R.Cheng, L.Wu, R.Lai, C.Peng, N.Naowarojna, W.Hu, X.Li, S.A.Whelan, N.Lee, J.Lopez, C.Zhao, Y.Yong, J.Xue, X.Jiang, M.W.Grinstaff, Z.Deng, J.Chen, Q.Cui, J.H.Zhou, P.Liu. Single-Step Replacement of An Unreactive C-H Bond By A C-S Bond Using Polysulfide As the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis V. 10 8981 2020.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.0C01809
Page generated: Sun Jul 28 02:33:54 2024

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