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Chlorine in PDB 6kxk: BON1

Protein crystallography data

The structure of BON1, PDB code: 6kxk was solved by Q.C.Wang, M.Q.Jiang, M.N.Isupov, L.F.Sun, Y.K.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.21 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 122.284, 118.716, 222.253, 90.00, 90.20, 90.00
R / Rfree (%) 22.7 / 26.6

Other elements in 6kxk:

The structure of BON1 also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the BON1 (pdb code 6kxk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the BON1, PDB code: 6kxk:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6kxk

Go back to Chlorine Binding Sites List in 6kxk
Chlorine binding site 1 out of 2 in the BON1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of BON1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl619

b:58.3
occ:1.00
CG2 C:THR96 3.6 42.7 1.0
ND2 C:ASN65 3.6 48.8 1.0
O C:LYS38 4.0 49.9 1.0
OD1 C:ASP40 4.0 56.2 1.0
C C:LYS38 4.5 49.0 1.0
CB C:LYS38 4.7 48.5 1.0
CG C:ASP40 4.7 50.7 1.0
O C:HOH729 4.8 39.9 1.0
CG C:ASN65 4.8 45.6 1.0
N C:SER39 4.8 46.8 1.0
CA C:SER39 4.8 50.5 1.0
OD2 C:ASP40 4.9 54.3 1.0
CA C:ASN65 4.9 44.5 1.0

Chlorine binding site 2 out of 2 in 6kxk

Go back to Chlorine Binding Sites List in 6kxk
Chlorine binding site 2 out of 2 in the BON1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of BON1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl625

b:62.5
occ:1.00
CG2 D:THR96 3.6 48.7 1.0
ND2 D:ASN65 3.6 42.7 1.0
OD1 D:ASP40 3.9 58.3 1.0
O D:LYS38 4.0 47.6 1.0
C D:LYS38 4.4 48.1 1.0
O D:HOH715 4.5 45.4 1.0
CB D:LYS38 4.6 52.3 1.0
CG D:ASP40 4.6 52.6 1.0
CA D:SER39 4.7 48.3 1.0
N D:SER39 4.7 43.3 1.0
CG D:ASN65 4.8 42.1 1.0
OD2 D:ASP40 4.8 60.8 1.0
CA D:ASN65 4.8 40.9 1.0
C D:SER39 4.9 43.2 1.0
CB D:THR96 5.0 47.8 1.0

Reference:

Q.C.Wang, M.Q.Jiang, M.N.Isupov, L.F.Sun, Y.K.Wu. Crystal Structure of An Arabidopsis Copine Providing Insights Into This Protein Family To Be Published.
Page generated: Sat Jul 12 16:24:56 2025

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