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Chlorine in PDB 6kxu: BON1

Protein crystallography data

The structure of BON1, PDB code: 6kxu was solved by Q.C.Wang, M.Q.Jiang, M.N.Isupov, L.F.Sun, Y.K.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 82.31 / 2.83
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 122.406, 118.705, 222.317, 90.00, 90.03, 90.00
R / Rfree (%) 20.4 / 25

Other elements in 6kxu:

The structure of BON1 also contains other interesting chemical elements:

Manganese (Mn) 10 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the BON1 (pdb code 6kxu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the BON1, PDB code: 6kxu:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6kxu

Go back to Chlorine Binding Sites List in 6kxu
Chlorine binding site 1 out of 2 in the BON1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of BON1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl605

b:77.0
occ:1.00
CG2 C:THR96 3.5 65.0 1.0
ND2 C:ASN65 3.6 96.8 1.0
OD1 C:ASP40 3.6 57.2 1.0
O C:LYS38 3.9 68.2 1.0
C C:LYS38 4.5 66.6 1.0
CG C:ASN65 4.5 78.9 1.0
CG C:ASP40 4.5 68.1 1.0
CB C:LYS38 4.7 62.4 1.0
O C:SER39 4.9 58.3 1.0
CA C:ASN65 4.9 67.8 1.0
C C:SER39 4.9 63.2 1.0
CA C:SER39 4.9 65.6 1.0
OD2 C:ASP40 4.9 71.1 1.0
CB C:THR96 5.0 70.1 1.0

Chlorine binding site 2 out of 2 in 6kxu

Go back to Chlorine Binding Sites List in 6kxu
Chlorine binding site 2 out of 2 in the BON1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of BON1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl602

b:73.4
occ:1.00
CG2 D:THR96 3.4 72.6 1.0
O D:LYS38 3.9 63.0 1.0
OD1 D:ASP40 3.9 73.3 1.0
ND2 D:ASN65 4.0 72.8 1.0
C D:LYS38 4.6 67.8 1.0
CG D:ASP40 4.7 71.2 1.0
CB D:THR96 4.8 73.4 1.0
CA D:SER39 4.9 64.8 1.0
CB D:LYS38 5.0 72.2 1.0

Reference:

Q.C.Wang, M.Q.Jiang, M.N.Isupov, L.F.Sun, Y.K.Wu. Crystal Structure of An Arabidopsis Copine Providing Insights Into This Protein Family To Be Published.
Page generated: Sat Jul 12 16:25:14 2025

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