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Chlorine in PDB 6l46: High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans

Enzymatic activity of High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans

All present enzymatic activity of High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans:
1.7.2.1;

Protein crystallography data

The structure of High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans, PDB code: 6l46 was solved by Y.Fukuda, Y.Hirano, K.Kusaka, T.Inoue, T.Tamada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.30
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 114.212, 114.212, 83.688, 90.00, 90.00, 120.00
R / Rfree (%) 14.2 / 15.9

Other elements in 6l46:

The structure of High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans also contains other interesting chemical elements:

Copper (Cu) 4 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans (pdb code 6l46). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans, PDB code: 6l46:

Chlorine binding site 1 out of 1 in 6l46

Go back to Chlorine Binding Sites List in 6l46
Chlorine binding site 1 out of 1 in the High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High-Resolution Neutron and X-Ray Joint Refined Structure of Copper- Containing Nitrite Reductase From Geobacillus Thermodenitrificans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:7.3
occ:0.29
 O A:DOD781 0.3 19.9 0.7
D2 A:DOD781 0.8 24.6 0.7
D1 A:DOD781 1.1 15.5 0.7
CU A:CU402 2.2 8.6 1.0
NA A:NA405 2.3 6.0 0.2
O A:DOD520 2.6 15.1 1.0
O A:DOD807 2.8 27.9 0.9
D1 A:DOD807 3.0 33.0 0.9
D1 A:DOD520 3.0 19.6 1.0
HE1 A:HIS134 3.1 8.7 1.0
NE2 A:HIS134 3.3 8.3 1.0
CE1 A:HIS134 3.5 8.0 1.0
D2 A:DOD807 3.5 23.7 0.9
NE2 A:HIS100 4.0 7.6 1.0
OD2 A:ASP98 4.1 12.3 1.0
D2 A:DOD526 4.2 25.5 0.7
CU A:CU404 4.3 6.3 0.1
HG12 A:VAL140 4.4 9.6 1.0
D2 A:DOD958 4.5 38.4 1.0
O A:DOD526 4.5 25.5 0.7
CD2 A:HIS134 4.6 7.8 1.0
ND1 A:HIS134 4.8 7.9 1.0
HE1 A:HIS100 4.8 9.1 1.0
CE1 A:HIS100 4.9 7.2 1.0
CD2 A:HIS100 5.0 7.3 1.0
HD11 A:ILE144 5.0 10.7 1.0

Reference:

Y.Fukuda, Y.Hirano, K.Kusaka, T.Inoue, T.Tamada. High-Resolution Neutron Crystallography Visualizes An Oh-Bound Resting State of A Copper-Containing Nitrite Reductase Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1918125117
Page generated: Sun Jul 28 02:42:19 2024

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