Chlorine in PDB 6lam: Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine

The structure of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine, PDB code: 6lam was solved by Y.Shima, D.Morita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.09 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	251.879, 46.729, 84.983, 90.00, 90.80, 90.00
R / Rfree (%)	19.1 / 22.9

The structure of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine also contains other interesting chemical elements:

Zinc

(Zn)

7 atoms

The binding sites of Chlorine atom in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine (pdb code 6lam). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine, PDB code: 6lam:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl317 b:32.7 occ:0.45 CL C:CL317 0.0 32.7 0.5 CL C:CL317 1.8 36.6 0.6 NH1 C:ARG234 2.8 19.6 1.0 NE1 C:TRP244 2.9 20.1 1.0 SD D:MET99 3.1 67.9 1.0 O D:HOH240 3.2 28.5 1.0 NH2 C:ARG234 3.4 21.6 1.0 CZ C:ARG234 3.5 24.9 1.0 CD1 C:TRP244 3.8 19.2 1.0 CE2 C:TRP244 3.9 21.2 1.0 CH2 C:TRP204 4.0 27.1 1.0 CG D:MET99 4.2 40.5 1.0 CZ2 C:TRP244 4.2 21.8 1.0 O1 D:EDO105 4.4 28.9 1.0 CB D:TYR10 4.4 20.4 1.0 O D:VAL9 4.6 21.6 1.0 CE D:MET99 4.6 37.4 1.0 C2 D:EDO105 4.7 42.8 1.0 CZ3 C:TRP204 4.7 23.9 1.0 CZ2 C:TRP204 4.7 28.1 1.0 O2 D:EDO105 4.7 26.6 1.0 NE C:ARG234 4.8 20.9 1.0 OE1 D:GLN8 4.9 23.1 1.0 CB D:MET99 4.9 24.3 1.0 CG C:TRP244 5.0 15.7 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*098 Complexed with Lysophosphatidylethanolamine within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl317 b:36.6 occ:0.55 CL C:CL317 0.0 36.6 0.6 CL C:CL317 1.8 32.7 0.5 SD D:MET99 3.2 67.9 1.0 NH2 C:ARG234 3.3 21.6 1.0 CH2 C:TRP204 3.3 27.1 1.0 O D:HOH236 3.5 26.6 1.0 CG D:MET99 3.6 40.5 1.0 NH1 C:ARG234 3.8 19.6 1.0 CB D:TYR10 3.9 20.4 1.0 CZ C:ARG234 4.0 24.9 1.0 CZ2 C:TRP204 4.1 28.1 1.0 NE1 C:TRP244 4.1 20.1 1.0 O D:HOH219 4.2 24.6 1.0 O D:ASP96 4.2 30.0 1.0 CZ3 C:TRP204 4.3 23.9 1.0 CB D:MET99 4.3 24.3 1.0 O1 D:EDO105 4.4 28.9 1.0 O D:VAL9 4.5 21.6 1.0 CD1 C:TRP244 4.6 19.2 1.0 CA D:TYR10 4.7 19.0 1.0 O D:HOH240 4.9 28.5 1.0

Y.Shima, D.Morita, T.Mizutani, N.Mori, B.Mikami, M.Sugita. Crystal Structures of Lysophospholipid-Bound Mhc Class I Molecules. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 32269076
DOI: 10.1074/JBC.RA119.011932