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Chlorine in PDB 6ldx: Structure Antibody E6 in Complex with Methylated Peptide

Protein crystallography data

The structure of Structure Antibody E6 in Complex with Methylated Peptide, PDB code: 6ldx was solved by J.M.M.Caaveiro, K.Tsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.94 / 1.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 82.329, 82.329, 120.269, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 21.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure Antibody E6 in Complex with Methylated Peptide (pdb code 6ldx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure Antibody E6 in Complex with Methylated Peptide, PDB code: 6ldx:

Chlorine binding site 1 out of 1 in 6ldx

Go back to Chlorine Binding Sites List in 6ldx
Chlorine binding site 1 out of 1 in the Structure Antibody E6 in Complex with Methylated Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure Antibody E6 in Complex with Methylated Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl301

b:31.6
occ:1.00
OG1 B:THR12 3.1 23.3 0.5
O B:HOH103 3.2 30.7 1.0
O H:HOH553 3.2 26.1 1.0
N H:SER27 3.3 24.4 1.0
ND2 H:ASN31 3.4 19.1 1.0
CG2 B:THR12 3.6 24.9 0.5
CB H:PHE26 3.7 23.2 1.0
OG1 B:THR12 3.8 24.8 0.5
CA H:PHE26 3.8 24.7 1.0
CB H:SER27 4.1 26.4 1.0
C H:PHE26 4.1 23.7 1.0
CB B:THR12 4.1 23.2 0.5
CB B:THR12 4.2 24.4 0.5
CA H:SER27 4.2 24.7 1.0
CB H:ASN30 4.2 25.9 1.0
O H:SER27 4.4 22.8 1.0
CG2 B:THR12 4.4 24.0 0.5
ND2 H:ASN30 4.5 30.8 1.0
O B:HOH102 4.5 28.3 0.5
CG H:ASN31 4.6 19.0 1.0
CG H:ASN30 4.8 29.4 1.0
C H:SER27 4.8 22.5 1.0
CG H:PHE26 5.0 22.2 1.0

Reference:

M.Ishii, M.Nakakido, J.M.M.Caaveiro, D.Kuroda, C.Okumura, T.Maruyama, K.Entzminger, K.Tsumoto. Structural Basis For Antigen Recognition By Methylated Lysine Specific Antibodies To Be Published.
Page generated: Sat Jul 12 16:30:22 2025

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