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Chlorine in PDB 6lqw: Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.

Protein crystallography data

The structure of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution., PDB code: 6lqw was solved by V.Viswanathan, S.N.Pandey, N.Ahmad, C.Rani, P.Sharma, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.64 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.295, 96.732, 83.931, 90.00, 90.30, 90.00
R / Rfree (%) 21.2 / 29.2

Other elements in 6lqw:

The structure of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. (pdb code 6lqw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution., PDB code: 6lqw:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6lqw

Go back to Chlorine Binding Sites List in 6lqw
Chlorine binding site 1 out of 2 in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl606

b:34.9
occ:1.00
ND2 A:ASN95 3.4 40.2 1.0
O5 A:NAG602 3.5 41.8 1.0
NH1 A:ARG96 3.5 25.1 1.0
O6 A:NAG602 3.6 32.6 1.0
C1 A:NAG602 3.8 38.4 1.0
NH1 A:ARG506 3.9 23.4 1.0
NH2 A:ARG96 4.0 25.6 1.0
C2 A:NAG602 4.0 44.1 1.0
NH2 A:ARG506 4.1 23.9 1.0
CA A:ARG504 4.1 22.9 1.0
CZ A:ARG96 4.3 26.5 1.0
O7 A:NAG602 4.3 33.6 1.0
CZ A:ARG506 4.4 24.5 1.0
C5 A:NAG602 4.5 45.0 1.0
CG A:ASN95 4.6 31.5 1.0
C6 A:NAG602 4.6 40.5 1.0
C A:ARG504 4.6 24.5 1.0
CB A:ARG504 4.7 28.4 1.0
O A:ARG504 4.7 26.0 1.0
CB A:ASN95 4.8 31.7 1.0
C4 A:NAG602 4.9 49.9 1.0
N2 A:NAG602 4.9 45.6 1.0
CG A:ARG504 4.9 30.8 1.0
C7 A:NAG602 4.9 44.0 1.0

Chlorine binding site 2 out of 2 in 6lqw

Go back to Chlorine Binding Sites List in 6lqw
Chlorine binding site 2 out of 2 in the Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl608

b:46.7
occ:1.00
O5 B:NAG604 3.5 45.1 1.0
C6 B:NAG604 3.9 52.2 1.0
NH1 B:ARG506 4.0 26.0 1.0
NH1 B:ARG96 4.1 29.6 1.0
NH2 B:ARG506 4.2 17.9 1.0
ND2 B:ASN95 4.2 39.6 1.0
C5 B:NAG604 4.3 52.0 1.0
NH2 B:ARG96 4.4 35.2 1.0
C1 B:NAG604 4.5 40.9 1.0
CZ B:ARG506 4.5 32.5 1.0
CA B:ARG504 4.6 29.5 1.0
CZ B:ARG96 4.8 34.0 1.0
C4 B:NAG604 4.9 58.2 1.0
C B:ARG504 5.0 29.0 1.0
O B:ARG504 5.0 32.5 1.0

Reference:

V.Viswanathan, S.N.Pandey, P.Sharma, C.Rani, N.Ahmad, S.Sharma, T.P.Singh. Crystal Structure of A Dimeric Yak Lactoperoxidase at 2.59 A Resolution. To Be Published.
Page generated: Sat Jul 12 16:35:59 2025

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