Atomistry » Chlorine » PDB 6ldy-6luq » 6lr6
Atomistry »
  Chlorine »
    PDB 6ldy-6luq »
      6lr6 »

Chlorine in PDB 6lr6: The Crystal Structure of Human Cytoplasmic Lrs

Enzymatic activity of The Crystal Structure of Human Cytoplasmic Lrs

All present enzymatic activity of The Crystal Structure of Human Cytoplasmic Lrs:
6.1.1.4;

Protein crystallography data

The structure of The Crystal Structure of Human Cytoplasmic Lrs, PDB code: 6lr6 was solved by R.J.Liu, T.Long, H.Li, J.Li, J.H.Zhao, J.Z.Lin, A.Palencia, M.Z.Wang, S.Cusack, E.D.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.41 / 3.01
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 88.854, 95.798, 682.388, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 26

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Human Cytoplasmic Lrs (pdb code 6lr6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of Human Cytoplasmic Lrs, PDB code: 6lr6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6lr6

Go back to Chlorine Binding Sites List in 6lr6
Chlorine binding site 1 out of 2 in the The Crystal Structure of Human Cytoplasmic Lrs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Human Cytoplasmic Lrs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1201

b:0.6
occ:1.00
CL A:A2H1201 0.0 0.6 1.0
C13 A:A2H1201 1.8 0.1 1.0
C14 A:A2H1201 2.8 99.9 1.0
C11 A:A2H1201 2.8 0.5 1.0
CB A:VAL392 3.1 0.0 1.0
C10 A:A2H1201 3.3 93.8 1.0
CG1 A:VAL392 3.3 0.2 1.0
CG2 A:VAL392 3.4 96.1 1.0
OG1 A:THR298 3.5 97.5 1.0
C17 A:A2H1201 3.6 98.2 1.0
CB A:THR298 3.7 96.6 1.0
CG2 A:THR298 3.8 97.2 1.0
CB A:SER396 4.0 0.5 1.0
C15 A:A2H1201 4.1 98.1 1.0
C12 A:A2H1201 4.1 0.8 1.0
O A:ASP395 4.2 0.3 1.0
C A:ASP395 4.3 0.0 1.0
N18 A:A2H1201 4.4 97.8 1.0
N A:SER396 4.4 0.5 1.0
CA A:VAL392 4.6 0.3 1.0
O A:VAL392 4.6 0.2 1.0
C16 A:A2H1201 4.6 0.8 1.0
O1 A:A2H1201 4.6 96.6 1.0
CA A:SER396 4.7 0.3 1.0
CB A:ASP395 4.7 0.8 1.0
OG A:SER396 4.7 97.0 1.0
NE A:ARG295 5.0 88.5 1.0
CZ A:ARG295 5.0 90.2 1.0
CB A:ARG295 5.0 93.1 1.0
CA A:ASP395 5.0 0.9 1.0

Chlorine binding site 2 out of 2 in 6lr6

Go back to Chlorine Binding Sites List in 6lr6
Chlorine binding site 2 out of 2 in the The Crystal Structure of Human Cytoplasmic Lrs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Human Cytoplasmic Lrs within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1201

b:53.4
occ:1.00
CL B:A2H1201 0.0 53.4 1.0
C13 B:A2H1201 1.8 42.6 1.0
C14 B:A2H1201 2.8 33.6 1.0
C11 B:A2H1201 2.8 45.9 1.0
C10 B:A2H1201 3.2 34.8 1.0
OG1 B:THR298 3.3 32.2 1.0
C17 B:A2H1201 3.5 34.1 1.0
CB B:VAL392 3.6 35.3 1.0
CB B:THR298 3.8 30.8 1.0
CB B:SER396 3.8 45.4 1.0
CG2 B:THR298 3.9 35.0 1.0
O B:VAL392 4.1 37.4 1.0
C12 B:A2H1201 4.1 44.1 1.0
C15 B:A2H1201 4.1 36.5 1.0
CG2 B:VAL392 4.1 37.1 1.0
CG1 B:VAL392 4.1 36.5 1.0
N18 B:A2H1201 4.2 45.7 1.0
C B:ASP395 4.2 45.9 1.0
N B:SER396 4.2 45.5 1.0
O B:ASP395 4.2 47.2 1.0
CB B:ASP395 4.3 49.7 1.0
CA B:SER396 4.5 43.5 1.0
O1 B:A2H1201 4.6 31.0 1.0
CB B:ARG295 4.6 34.5 1.0
C16 B:A2H1201 4.6 42.2 1.0
CD B:ARG295 4.6 46.0 1.0
CA B:VAL392 4.7 37.4 1.0
OG B:SER396 4.7 45.8 1.0
CA B:ASP395 4.8 46.7 1.0
C B:VAL392 4.8 38.9 1.0

Reference:

R.J.Liu, T.Long, E.D.Wang. Molecular Basis of the Multifaceted Functions of Human Leucyl-Trna Synthetase in Protein Synthesis and Beyond Nucleic Acids Res. 2020.
ISSN: ESSN 1362-4962
Page generated: Sat Jul 12 16:36:02 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy