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Chlorine in PDB 6lzv: F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose.

Protein crystallography data

The structure of F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose., PDB code: 6lzv was solved by Y.Kitaoku, P.Ubonbal, L.T.Tran, R.C.Robinson, W.Suginta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.522, 56.957, 85.152, 90, 101.36, 90
R / Rfree (%) 17.1 / 22.5

Other elements in 6lzv:

The structure of F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. (pdb code 6lzv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose., PDB code: 6lzv:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6lzv

Go back to Chlorine Binding Sites List in 6lzv
Chlorine binding site 1 out of 3 in the F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl603

b:28.2
occ:1.00
O A:HOH789 3.0 33.6 1.0
OG A:SER298 3.0 26.1 1.0
NE2 A:GLN471 3.2 22.7 1.0
N A:SER298 3.3 24.4 1.0
N A:ALA297 3.5 27.7 1.0
CB A:SER298 3.5 22.2 1.0
CG A:GLN471 3.8 23.9 1.0
CD2 A:PHE296 3.8 29.4 1.0
CB A:PHE296 3.8 23.3 1.0
CA A:PHE296 3.9 23.4 1.0
C A:PHE296 3.9 27.6 1.0
CD A:GLN471 4.0 32.0 1.0
CB A:ALA475 4.0 22.9 1.0
CA A:SER298 4.0 26.2 1.0
CA A:HIS313 4.0 29.9 1.0
CA A:ALA297 4.2 28.4 1.0
C A:ALA297 4.2 29.3 1.0
CB A:ALA297 4.3 24.9 1.0
CG A:PHE296 4.3 28.1 1.0
N A:HIS313 4.4 33.2 1.0
CG2 A:THR312 4.4 28.6 1.0
ND1 A:HIS313 4.4 34.7 1.0
CB A:HIS313 4.6 32.2 1.0
C A:THR312 4.7 32.6 1.0
O A:THR312 4.7 34.0 1.0
O A:GLN471 4.8 27.0 1.0
O A:PHE296 4.9 29.3 1.0
CG A:HIS313 4.9 32.8 1.0
CE2 A:PHE296 4.9 31.7 1.0
C A:SER298 5.0 25.8 1.0

Chlorine binding site 2 out of 3 in 6lzv

Go back to Chlorine Binding Sites List in 6lzv
Chlorine binding site 2 out of 3 in the F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl604

b:58.5
occ:1.00
CB A:ALA306 4.0 26.2 1.0
CD1 A:TRP307 4.1 34.4 1.0
NE1 A:TRP307 4.1 33.5 1.0
O A:ALA303 4.2 33.8 1.0
CD1 A:PHE304 4.3 35.0 1.0
CA A:PHE304 4.8 34.5 1.0
CE1 A:PHE304 4.8 39.4 1.0

Chlorine binding site 3 out of 3 in 6lzv

Go back to Chlorine Binding Sites List in 6lzv
Chlorine binding site 3 out of 3 in the F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of F437A Mutant of Chitin-Specific Solute Binding Protein From Vibrio Harveyi Co-Crystalized with Chitobiose. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:67.3
occ:1.00
CE2 A:TRP307 4.5 32.5 1.0
NE1 A:TRP307 4.6 33.5 1.0
CZ2 A:TRP307 4.8 35.1 1.0
CD2 A:TRP307 4.9 33.2 1.0
CD1 A:TRP307 5.0 34.4 1.0

Reference:

Y.Kitaoku, P.Ubonbal, L.T.Tran, R.C.Robinson, W.Suginta. Structural Insight Into Chitin-Specific Solute-Binding Protein From Vibrio Harveyi To Be Published.
Page generated: Sat Jul 12 16:38:23 2025

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