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Chlorine in PDB 6mes: Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907)

Enzymatic activity of Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907)

All present enzymatic activity of Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907):
6.1.1.10;

Protein crystallography data

The structure of Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907), PDB code: 6mes was solved by X.Barros-Alvarez, W.G.J.Hol, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 103.77 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 87.640, 106.130, 207.550, 90.00, 90.00, 90.00
R / Rfree (%) 22.7 / 25.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907) (pdb code 6mes). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907), PDB code: 6mes:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6mes

Go back to Chlorine Binding Sites List in 6mes
Chlorine binding site 1 out of 2 in the Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl801

b:59.0
occ:1.00
CL1 B:JFA801 0.0 59.0 1.0
C16 B:JFA801 1.7 49.8 1.0
C17 B:JFA801 2.7 48.3 1.0
C3 B:JFA801 2.7 48.3 1.0
C4 B:JFA801 3.1 47.4 1.0
CE3 B:TRP474 3.5 41.7 1.0
CZ3 B:TRP474 3.7 41.6 1.0
C5 B:JFA801 3.8 46.2 1.0
CG2 B:VAL473 3.8 55.4 1.0
CD2 B:PHE522 3.8 38.2 1.0
C B:JFA801 4.0 49.2 1.0
C2 B:JFA801 4.0 47.3 1.0
CB B:PHE522 4.0 40.2 1.0
CG B:PHE522 4.2 38.7 1.0
CG B:LEU478 4.2 32.5 1.0
CB B:ALA477 4.4 37.7 1.0
C6 B:JFA801 4.5 45.9 1.0
CD2 B:LEU478 4.5 32.3 1.0
C1 B:JFA801 4.5 48.8 1.0
O B:VAL473 4.6 38.7 1.0
N3 B:JFA801 4.6 45.9 1.0
CE2 B:PHE522 4.6 37.6 1.0
CA B:TRP474 4.7 38.7 1.0
CD2 B:TRP474 4.7 40.3 1.0
CD1 B:LEU478 4.7 32.8 1.0
C B:VAL473 4.9 42.5 1.0
CH2 B:TRP474 5.0 40.6 1.0
N B:TRP474 5.0 39.8 1.0

Chlorine binding site 2 out of 2 in 6mes

Go back to Chlorine Binding Sites List in 6mes
Chlorine binding site 2 out of 2 in the Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl801

b:50.7
occ:1.00
CL B:JFA801 0.0 50.7 1.0
C B:JFA801 1.7 49.2 1.0
C17 B:JFA801 2.7 48.3 1.0
C1 B:JFA801 2.7 48.8 1.0
OH B:TYR481 3.2 25.0 1.0
N B:ILE248 3.6 31.9 1.0
NE2 B:HIS523 3.6 37.0 1.0
CG1 B:ILE248 3.6 35.4 1.0
CE1 B:HIS523 3.8 36.0 1.0
CZ B:TYR481 3.9 26.6 1.0
C16 B:JFA801 4.0 49.8 1.0
ND2 B:ASN480 4.0 28.9 1.0
C2 B:JFA801 4.0 47.3 1.0
CA B:PRO247 4.1 31.2 1.0
CB B:PRO247 4.3 31.2 1.0
CE2 B:TYR481 4.3 28.2 1.0
C B:PRO247 4.3 32.3 1.0
O B:ILE248 4.4 32.1 1.0
O B:ALA477 4.5 34.7 1.0
C3 B:JFA801 4.5 48.3 1.0
C B:ALA477 4.6 35.4 1.0
CA B:ILE248 4.6 32.1 1.0
CD1 B:ILE248 4.6 36.9 1.0
CB B:ALA477 4.7 37.7 1.0
CE1 B:TYR481 4.7 26.8 1.0
CB B:ILE248 4.7 33.2 1.0
N B:LEU478 4.7 33.5 1.0
CA B:LEU478 4.8 32.5 1.0
CD2 B:LEU478 4.8 32.3 1.0
CD2 B:HIS523 4.9 37.8 1.0
C B:ILE248 4.9 32.9 1.0

Reference:

X.Barros-Alvarez, W.G.J.Hol. Trypanosoma Brucei Methionyl-Trna Synthetase in Complex with Inhibitor (Chem 1907) To Be Published.
Page generated: Sat Jul 12 16:47:29 2025

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