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Chlorine in PDB 6n1f: Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei

Protein crystallography data

The structure of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei, PDB code: 6n1f was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.35 / 2.05
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 47.030, 54.990, 112.100, 77.66, 87.03, 64.73
R / Rfree (%) 20.8 / 24.2

Other elements in 6n1f:

The structure of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei (pdb code 6n1f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei, PDB code: 6n1f:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6n1f

Go back to Chlorine Binding Sites List in 6n1f
Chlorine binding site 1 out of 2 in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:21.8
occ:1.00
O A:HOH438 3.1 24.7 1.0
N A:ALA38 3.2 21.1 1.0
N B:ALA38 3.2 17.3 1.0
O B:HOH443 3.3 16.3 1.0
CB B:ASP37 3.7 21.6 1.0
CB A:ASP37 3.8 26.0 1.0
CA A:ASP37 3.8 22.1 1.0
CA B:ASP37 3.8 16.9 1.0
CB B:TYR33 3.8 17.0 1.0
CB A:TYR33 3.9 17.2 1.0
O B:HOH404 3.9 13.9 1.0
CB A:ALA38 3.9 23.1 1.0
CB B:ALA38 4.0 20.3 1.0
C A:ASP37 4.0 25.1 1.0
C B:ASP37 4.0 16.8 1.0
OD1 B:ASP37 4.1 27.5 1.0
CG B:ASP37 4.1 25.4 1.0
CA A:ALA38 4.1 27.2 1.0
OD1 A:ASP37 4.2 25.8 1.0
CG B:TYR33 4.2 23.5 1.0
CG A:ASP37 4.2 29.4 1.0
CA B:ALA38 4.2 23.8 1.0
CG A:TYR33 4.2 26.0 1.0
CD2 A:TYR33 4.3 24.3 1.0
CD2 B:TYR33 4.4 27.4 1.0
O B:TYR33 4.8 16.9 1.0
O B:HOH506 4.8 36.2 1.0
O A:TYR33 4.9 17.3 1.0
CD1 B:TYR33 5.0 16.8 1.0
N A:HIS39 5.0 23.2 1.0

Chlorine binding site 2 out of 2 in 6n1f

Go back to Chlorine Binding Sites List in 6n1f
Chlorine binding site 2 out of 2 in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:5.6
occ:0.50
O C:HOH473 3.0 24.6 1.0
N C:ALA38 3.2 23.3 1.0
CB C:ASP37 3.7 21.9 1.0
CA C:ASP37 3.7 25.0 1.0
CB C:TYR33 3.8 24.3 1.0
O C:HOH408 3.8 19.7 1.0
CB C:ALA38 4.0 21.6 1.0
C C:ASP37 4.0 28.8 1.0
CG C:TYR33 4.2 26.2 1.0
CA C:ALA38 4.2 24.5 1.0
CG C:ASP37 4.2 21.8 1.0
OD2 C:ASP37 4.3 21.0 1.0
CD1 C:TYR33 4.3 26.0 1.0
O C:TYR33 4.9 18.8 1.0
N C:HIS39 5.0 23.7 1.0

Reference:

J.Abendroth, P.S.Horanyi, D.Lorimer, T.E.Edwards. Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei To Be Published.
Page generated: Sat Jul 12 16:59:33 2025

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