Chlorine in PDB 6nfl: Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Complexed with 2-Hp

Enzymatic activity of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Complexed with 2-Hp

All present enzymatic activity of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Complexed with 2-Hp:
3.5.4.38;

Protein crystallography data

The structure of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Complexed with 2-Hp, PDB code: 6nfl was solved by K.Shi, K.Orellana, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	41.91 / 1.73
*Space group*	P 4₁ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	50.650, 50.650, 149.250, 90.00, 90.00, 90.00
*R / R_free (%)*	16.2 / 19.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Complexed with 2-Hp (pdb code 6nfl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Complexed with 2-Hp, PDB code: 6nfl:

Chlorine binding site 1 out of 1 in 6nfl

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Chlorine Binding Sites List in 6nfl

Chlorine binding site 1 out of 1 in the Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Complexed with 2-Hp

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B with Loop 7 From APOBEC3G Complexed with 2-Hp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl403 b:20.6 occ:1.00	H	A:ILE335	2.5	20.4	1.0
	HE	A:ARG374	3.0	19.1	1.0
	OG	A:SER370	3.0	19.1	1.0
	HA	A:SER334	3.0	16.8	1.0
	HB2	A:SER334	3.1	27.7	1.0
	O	A:HOH588	3.1	27.0	1.0
	HD21	A:LEU373	3.2	26.2	1.0
	HG3	A:ARG374	3.2	17.2	1.0
	N	A:ILE335	3.3	17.0	1.0
	HG	A:SER370	3.3	23.0	1.0
	O	A:HOH574	3.3	21.4	1.0
	O	A:HOH577	3.3	46.1	1.0
	HG12	A:ILE335	3.4	30.0	1.0
	HB	A:ILE335	3.4	21.9	1.0
	HA	A:SER370	3.4	18.1	1.0
	NE	A:ARG374	3.5	15.9	1.0
	CA	A:SER334	3.7	13.9	1.0
	CB	A:SER334	3.7	23.0	1.0
	HB2	A:SER370	3.8	21.5	1.0
	CB	A:SER370	3.8	17.9	1.0
	HB3	A:LEU373	3.9	17.0	1.0
	HH21	A:ARG374	3.9	24.2	1.0
	CG	A:ARG374	3.9	14.3	1.0
	C	A:SER334	4.0	18.6	1.0
	CB	A:ILE335	4.0	18.2	1.0
	HB3	A:SER334	4.0	27.7	1.0
	CA	A:SER370	4.0	15.1	1.0
	HG2	A:ARG374	4.0	17.2	1.0
	CG1	A:ILE335	4.0	25.0	1.0
	CD2	A:LEU373	4.1	21.8	1.0
	CD	A:ARG374	4.2	15.1	1.0
	O	A:SER370	4.2	15.3	1.0
	HG13	A:ILE335	4.2	30.0	1.0
	CA	A:ILE335	4.2	14.0	1.0
	HD2	A:ARG374	4.2	18.2	1.0
	CZ	A:ARG374	4.3	19.5	1.0
	NH2	A:ARG374	4.3	20.2	1.0
	HG	A:LEU373	4.5	18.3	1.0
	C	A:SER370	4.5	18.2	1.0
	HD22	A:LEU373	4.6	26.2	1.0
	HD23	A:LEU373	4.6	26.2	1.0
	HB3	A:SER370	4.7	21.5	1.0
	CB	A:LEU373	4.7	14.2	1.0
	CG	A:LEU373	4.7	15.2	1.0
	H	A:ARG374	4.8	17.7	1.0
	O	A:ILE335	4.8	21.7	1.0
	HA	A:ILE335	4.9	16.8	1.0
	O	A:VAL333	5.0	18.0	1.0
	OG	A:SER334	5.0	26.7	1.0

Reference:

K.Shi, H.Aihara. Crystal Structure of the Cancer Genomic Dna Mutator APOBEC3B To Be Published.

Page generated: Sat Jul 12 17:14:11 2025

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