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Chlorine in PDB 6nkc: Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.

Enzymatic activity of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.

All present enzymatic activity of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.:
3.1.1.3;

Protein crystallography data

The structure of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome., PDB code: 6nkc was solved by Y.Kim, L.Welk, G.Mukendi, G.Nkhi, T.Motloi, R.Jedrzejczak, N.Feto, A.Joachimiak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.26 / 1.63
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 49.870, 49.870, 141.625, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 18.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome. (pdb code 6nkc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome., PDB code: 6nkc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6nkc

Go back to Chlorine Binding Sites List in 6nkc
Chlorine binding site 1 out of 2 in the Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl200

b:22.4
occ:1.00
O A:HOH363 3.2 20.0 1.0
N A:HIS152 3.2 14.8 1.0
N A:TYR130 3.3 17.1 1.0
O A:HOH407 3.3 23.9 1.0
CB A:HIS152 3.7 15.9 1.0
CB A:SER151 3.8 15.8 1.0
CB A:TYR130 3.8 18.6 1.0
O A:SER128 4.0 20.3 1.0
CA A:SER151 4.0 15.4 1.0
CA A:TYR130 4.0 18.1 1.0
CD2 A:TYR130 4.1 21.2 1.0
CA A:HIS152 4.1 14.6 1.0
C A:SER151 4.1 15.0 1.0
CG1 A:ILE131 4.1 19.6 1.0
CG A:TYR130 4.2 19.9 1.0
C A:ASP129 4.3 18.7 1.0
CA A:ASP129 4.3 17.3 1.0
N A:ILE131 4.3 17.0 1.0
C A:TYR130 4.5 18.4 1.0
OD1 A:ASP129 4.5 15.8 1.0
OG A:SER151 4.8 15.1 1.0
CD1 A:ILE131 4.9 22.3 1.0
C A:SER128 4.9 18.7 1.0

Chlorine binding site 2 out of 2 in 6nkc

Go back to Chlorine Binding Sites List in 6nkc
Chlorine binding site 2 out of 2 in the Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl200

b:22.5
occ:1.00
O B:HOH353 3.2 20.3 1.0
N B:HIS152 3.3 14.9 1.0
N B:TYR130 3.3 16.9 1.0
O B:HOH486 3.3 31.3 1.0
O B:HOH413 3.3 24.3 1.0
CB B:HIS152 3.7 16.2 1.0
CB B:SER151 3.8 15.6 1.0
CB B:TYR130 3.8 19.0 1.0
O B:SER128 3.9 21.4 1.0
CA B:SER151 4.0 15.8 1.0
CA B:TYR130 4.0 18.5 1.0
CD2 B:TYR130 4.0 21.5 1.0
CA B:HIS152 4.1 14.4 1.0
C B:SER151 4.1 15.0 1.0
CG B:TYR130 4.2 21.3 1.0
CG1 B:ILE131 4.2 19.2 1.0
C B:ASP129 4.2 19.2 1.0
CA B:ASP129 4.3 17.9 1.0
N B:ILE131 4.3 16.9 1.0
C B:TYR130 4.4 18.7 1.0
OD1 B:ASP129 4.5 16.2 1.0
OG B:SER151 4.8 15.6 1.0
C B:SER128 4.9 19.9 1.0
CD1 B:ILE131 4.9 21.2 1.0

Reference:

Y.Kim, L.Welk, R.Jedrzejczak, A.Feto, A.Joachimiak. Crystal Structure of the Lipase LIP_VUT1 From Goat Rumen Metagenome. To Be Published.
Page generated: Sat Jul 12 17:20:03 2025

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