Chlorine in PDB 6nl0: Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp

Enzymatic activity of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp

All present enzymatic activity of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp:
2.7.7.7;

Protein crystallography data

The structure of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp, PDB code: 6nl0 was solved by V.K.Batra, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	21.23 / 1.97
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	50.317, 79.933, 55.119, 90.00, 107.97, 90.00
*R / R_free (%)*	19.3 / 23.7

Other elements in 6nl0:

The structure of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp also contains other interesting chemical elements:

Fluorine	(F)	2 atoms
Magnesium	(Mg)	1 atom
Sodium	(Na)	3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp (pdb code 6nl0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp, PDB code: 6nl0:

Chlorine binding site 1 out of 1 in 6nl0

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Chlorine Binding Sites List in 6nl0

Chlorine binding site 1 out of 1 in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with "Hot-Spot Sequence" with Beta-Gamma CF2 Analogue of Dgtp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl406 b:43.1 occ:1.00	N	A:HIS34	3.3	34.1	1.0
	C	A:ALA32	3.5	33.0	1.0
	CB	A:ALA32	3.5	34.6	1.0
	CA	A:ALA32	3.5	36.8	1.0
	CB	A:HIS34	3.5	34.8	1.0
	N	A:LYS35	3.6	30.6	1.0
	N	A:ILE33	3.7	33.2	1.0
	CA	A:HIS34	3.8	35.7	1.0
	O	A:ALA32	3.9	35.0	1.0
	CD2	A:HIS34	3.9	41.2	1.0
	CG	A:HIS34	4.1	35.9	1.0
	CG	A:LYS35	4.1	37.6	1.0
	C	A:HIS34	4.2	33.0	1.0
	C	A:ILE33	4.4	35.6	1.0
	O	A:HOH624	4.6	40.2	1.0
	CB	A:LYS35	4.6	30.6	1.0
	CA	A:ILE33	4.7	38.6	1.0
	O4	D:DT1	4.7	37.6	1.0
	CA	A:LYS35	4.7	29.8	1.0
	C7	D:DT1	4.8	34.2	1.0
	C4	D:DT1	5.0	34.9	1.0
	N	A:ALA32	5.0	32.2	1.0

Reference:

V.K.Batra, S.H.Wilson. Crystal Structure of A Ternary Complex To Be Published.

Page generated: Sat Jul 12 17:21:58 2025

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