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Chlorine in PDB 6o04: M.Tb Mend Intii Bound with Inhibitor

Enzymatic activity of M.Tb Mend Intii Bound with Inhibitor

All present enzymatic activity of M.Tb Mend Intii Bound with Inhibitor:
2.2.1.9;

Protein crystallography data

The structure of M.Tb Mend Intii Bound with Inhibitor, PDB code: 6o04 was solved by J.M.Johnston, G.Bashiri, E.M.Bulloch, E.M.N.Jirgis, L.V.Nigon, H.Chuang, E.N.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.40 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 100.798, 143.314, 173.616, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 24

Other elements in 6o04:

The structure of M.Tb Mend Intii Bound with Inhibitor also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the M.Tb Mend Intii Bound with Inhibitor (pdb code 6o04). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the M.Tb Mend Intii Bound with Inhibitor, PDB code: 6o04:

Chlorine binding site 1 out of 1 in 6o04

Go back to Chlorine Binding Sites List in 6o04
Chlorine binding site 1 out of 1 in the M.Tb Mend Intii Bound with Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of M.Tb Mend Intii Bound with Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl603

b:53.9
occ:1.00
NE B:ARG331 3.1 60.6 1.0
N B:ARG268 3.2 52.5 1.0
NH1 B:ARG331 3.6 58.5 1.0
CZ B:ARG331 3.8 51.7 1.0
CZ3 B:TRP328 3.8 59.3 1.0
CA B:LEU267 3.9 45.1 1.0
C B:LEU267 4.0 52.8 1.0
CA B:ARG268 4.0 48.9 0.5
CA B:ARG268 4.0 48.8 0.5
CD B:ARG331 4.1 53.7 1.0
CB B:ARG268 4.1 43.6 0.5
CB B:ARG268 4.1 43.6 0.5
O B:ARG268 4.1 48.9 1.0
CD2 B:LEU267 4.1 51.6 1.0
CB B:LEU267 4.3 49.2 1.0
C B:ARG268 4.3 51.1 1.0
CE3 B:TRP328 4.7 58.0 1.0
CH2 B:TRP328 4.7 51.0 1.0
CG B:ARG331 4.8 44.3 1.0
CG B:LEU267 4.8 56.3 1.0
O B:LEU266 4.9 57.3 1.0

Reference:

G.Bashiri, L.V.Nigon, E.N.M.Jirgis, N.A.T.Ho, T.Stanborough, S.S.Dawes, E.N.Baker, E.M.M.Bulloch, J.M.Johnston. Allosteric Regulation of Menaquinone (Vitamin K2) Biosynthesis in the Human Pathogenmycobacterium Tuberculosis. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 32029475
DOI: 10.1074/JBC.RA119.012158
Page generated: Sat Jul 12 17:35:21 2025

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