Chlorine in PDB 6o93: D-Alanyl Transferase Dltd From Enterococcus Faecalis

The structure of D-Alanyl Transferase Dltd From Enterococcus Faecalis, PDB code: 6o93 was solved by M.Shakhashiro, K.V.Korotkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.96 / 2.18
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	102.750, 102.750, 205.750, 90.00, 90.00, 120.00
R / Rfree (%)	18.3 / 21.9

The structure of D-Alanyl Transferase Dltd From Enterococcus Faecalis also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the D-Alanyl Transferase Dltd From Enterococcus Faecalis (pdb code 6o93). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the D-Alanyl Transferase Dltd From Enterococcus Faecalis, PDB code: 6o93:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the D-Alanyl Transferase Dltd From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of D-Alanyl Transferase Dltd From Enterococcus Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl508 b:59.3 occ:1.00 HH21 A:ARG92 2.6 27.7 1.0 HE A:ARG92 2.6 27.3 1.0 NH2 A:ARG92 3.3 23.0 1.0 NE A:ARG92 3.3 22.8 1.0 O A:HOH853 3.3 35.1 1.0 OD2 A:ASP389 3.7 29.4 1.0 CZ A:ARG92 3.7 22.6 1.0 CG A:TYR244 3.9 28.0 1.0 CD2 A:TYR244 4.0 27.5 1.0 HH22 A:ARG92 4.0 27.7 1.0 HB3 A:TYR244 4.0 34.7 1.0 HB2 A:TYR244 4.0 34.7 1.0 HG2 A:ARG92 4.1 29.4 1.0 HD2 A:TYR244 4.2 33.0 1.0 CD1 A:TYR244 4.2 28.0 1.0 CG A:ASP389 4.2 28.3 1.0 CB A:TYR244 4.2 28.9 1.0 HB2 A:TYR90 4.3 34.8 1.0 HZ1 A:LYS393 4.3 58.5 1.0 OD1 A:ASP389 4.3 28.3 1.0 CE2 A:TYR244 4.4 27.0 1.0 HB3 A:TYR90 4.4 34.8 1.0 CD A:ARG92 4.4 22.9 1.0 O A:HOH668 4.5 41.2 1.0 HD1 A:TYR244 4.5 33.6 1.0 CE1 A:TYR244 4.6 28.4 1.0 HD2 A:TYR90 4.6 34.2 1.0 CZ A:TYR244 4.6 28.0 1.0 HD3 A:ARG92 4.6 27.4 1.0 CG A:ARG92 4.7 24.5 1.0 CB A:TYR90 4.7 29.0 1.0 HG3 A:ARG92 4.7 29.4 1.0 HE2 A:TYR244 4.8 32.4 1.0 CD2 A:TYR90 4.9 28.5 1.0 NH1 A:ARG92 5.0 22.8 1.0

Chlorine binding site 2 out of 3 in the D-Alanyl Transferase Dltd From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of D-Alanyl Transferase Dltd From Enterococcus Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl509 b:60.9 occ:1.00 H A:GLY271 2.5 48.2 1.0 HB3 A:SER269 2.8 46.5 1.0 HA3 A:GLY271 3.0 47.8 1.0 N A:GLY271 3.2 40.2 1.0 H A:PHE272 3.3 42.5 1.0 CA A:GLY271 3.5 39.8 1.0 CB A:SER269 3.7 38.7 1.0 HB2 A:SER269 3.8 46.5 1.0 N A:PHE272 4.0 35.4 1.0 H A:ASN270 4.1 47.0 1.0 N A:ASN270 4.2 39.1 1.0 C A:GLY271 4.3 37.9 1.0 HA2 A:GLY271 4.3 47.8 1.0 C A:SER269 4.4 38.0 1.0 C A:ASN270 4.4 40.6 1.0 HB2 A:ASN270 4.5 49.8 1.0 OG A:SER269 4.5 39.8 1.0 CA A:SER269 4.6 37.4 1.0 HB2 A:PHE272 4.7 36.8 1.0 CA A:ASN270 4.8 40.4 1.0 HA A:SER269 4.8 44.9 1.0 O A:SER269 4.9 37.5 1.0

Chlorine binding site 3 out of 3 in the D-Alanyl Transferase Dltd From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of D-Alanyl Transferase Dltd From Enterococcus Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl511 b:65.6 occ:1.00 H A:GLN335 2.4 31.5 1.0 HA A:SER334 3.0 29.9 1.0 HB2 A:GLN335 3.2 31.2 1.0 N A:GLN335 3.2 26.2 1.0 H A:ASP336 3.2 33.0 1.0 O A:HOH602 3.6 27.3 1.0 CA A:SER334 3.8 24.9 1.0 CB A:GLN335 3.9 26.0 1.0 C A:SER334 3.9 24.0 1.0 N A:ASP336 4.0 27.5 1.0 HZ2 A:LYS325 4.0 61.8 1.0 OD2 A:ASP336 4.0 38.5 1.0 CA A:GLN335 4.0 25.8 1.0 OG A:SER334 4.1 25.1 1.0 HG2 A:GLN335 4.1 31.4 1.0 CG A:ASP336 4.3 35.8 1.0 HZ1 A:LYS325 4.3 61.8 1.0 O A:LEU333 4.4 23.9 1.0 CB A:SER334 4.4 24.8 1.0 O A:HOH642 4.4 28.6 1.0 CG A:GLN335 4.5 26.1 1.0 NZ A:LYS325 4.5 51.5 1.0 C A:GLN335 4.5 26.8 1.0 HG3 A:GLN335 4.6 31.4 1.0 OD1 A:ASP336 4.6 36.5 1.0 HB2 A:SER334 4.6 29.8 1.0 HZ3 A:LYS325 4.7 61.8 1.0 HB2 A:ASP336 4.7 38.0 1.0 O A:HOH686 4.7 38.5 1.0 HG A:SER334 4.7 30.1 1.0 HB3 A:GLN335 4.7 31.2 1.0 HA A:GLN335 4.9 31.0 1.0 N A:SER334 4.9 24.2 1.0 CB A:ASP336 4.9 31.7 1.0

M.Shakhashiro, Z.A.Williamson, N.Korotkova, K.V.Korotkov. D-Alanyl Transferase Dltd From Enterococcus Faecalis To Be Published.