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Chlorine in PDB 6o9g: Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction (pdb code 6o9g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction, PDB code: 6o9g:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6o9g

Go back to Chlorine Binding Sites List in 6o9g
Chlorine binding site 1 out of 4 in the Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1302

b:0.4
occ:1.00
CL A:CYZ1302 0.0 0.4 1.0
C13 A:CYZ1302 1.8 0.4 1.0
C14 A:CYZ1302 2.7 0.4 1.0
C12 A:CYZ1302 2.8 0.4 1.0
O4 A:CYZ1302 3.1 0.4 1.0
OD1 A:ASP760 3.2 0.0 1.0
S2 A:CYZ1302 3.4 0.4 1.0
N3 A:CYZ1302 3.8 0.4 1.0
OG D:SER729 3.8 0.2 1.0
C11 A:CYZ1302 4.0 0.4 1.0
C10 A:CYZ1302 4.1 0.4 1.0
CB D:SER729 4.2 0.2 1.0
O A:PHE495 4.2 0.5 1.0
CG A:ASP760 4.3 0.0 1.0
C9 A:CYZ1302 4.5 0.4 1.0
CB A:LEU759 4.7 0.2 1.0
O3 A:CYZ1302 4.8 0.4 1.0
OD2 A:ASP760 4.9 0.0 1.0
NZ A:LYS763 4.9 0.4 1.0
CD A:LYS763 4.9 0.4 1.0

Chlorine binding site 2 out of 4 in 6o9g

Go back to Chlorine Binding Sites List in 6o9g
Chlorine binding site 2 out of 4 in the Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1302

b:0.1
occ:1.00
CL B:CYZ1302 0.0 0.1 1.0
C13 B:CYZ1302 1.8 0.1 1.0
C14 B:CYZ1302 2.7 0.1 1.0
C12 B:CYZ1302 2.8 0.1 1.0
OD1 B:ASP760 3.1 0.2 1.0
O4 B:CYZ1302 3.2 0.1 1.0
S2 B:CYZ1302 3.2 0.1 1.0
N3 B:CYZ1302 3.4 0.1 1.0
CB B:LEU759 3.9 0.6 1.0
C11 B:CYZ1302 4.0 0.1 1.0
C10 B:CYZ1302 4.0 0.1 1.0
CG B:ASP760 4.1 0.2 1.0
OG C:SER729 4.1 1.0 1.0
N B:ASP760 4.2 0.2 1.0
C B:LEU759 4.4 0.6 1.0
C9 B:CYZ1302 4.5 0.1 1.0
CB C:SER729 4.6 1.0 1.0
CD1 B:LEU759 4.6 0.6 1.0
CA B:ASP760 4.6 0.2 1.0
OD2 B:ASP760 4.6 0.2 1.0
O3 B:CYZ1302 4.7 0.1 1.0
O B:PHE495 4.7 0.6 1.0
O B:LEU759 4.8 0.6 1.0
CA B:LEU759 4.8 0.6 1.0
CG B:LEU759 4.9 0.6 1.0
CB B:ASP760 5.0 0.2 1.0

Chlorine binding site 3 out of 4 in 6o9g

Go back to Chlorine Binding Sites List in 6o9g
Chlorine binding site 3 out of 4 in the Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1302

b:1.0
occ:1.00
CL C:CYZ1302 0.0 1.0 1.0
C13 C:CYZ1302 1.8 1.0 1.0
C14 C:CYZ1302 2.7 1.0 1.0
C12 C:CYZ1302 2.8 1.0 1.0
O4 C:CYZ1302 3.1 1.0 1.0
OD1 C:ASP760 3.2 0.3 1.0
S2 C:CYZ1302 3.4 1.0 1.0
N3 C:CYZ1302 3.8 1.0 1.0
OG B:SER729 3.8 0.6 1.0
C11 C:CYZ1302 4.0 1.0 1.0
C10 C:CYZ1302 4.1 1.0 1.0
CB B:SER729 4.1 0.6 1.0
O C:PHE495 4.2 0.2 1.0
CG C:ASP760 4.3 0.3 1.0
C9 C:CYZ1302 4.5 1.0 1.0
CB C:LEU759 4.7 0.8 1.0
O3 C:CYZ1302 4.8 1.0 1.0
OD2 C:ASP760 4.9 0.3 1.0
NZ C:LYS763 4.9 1.0 1.0
CD C:LYS763 4.9 1.0 1.0

Chlorine binding site 4 out of 4 in 6o9g

Go back to Chlorine Binding Sites List in 6o9g
Chlorine binding site 4 out of 4 in the Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Open State GLUA2 in Complex with Stz and Blocked By Agtx-636, After Micelle Signal Subtraction within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl1302

b:0.3
occ:1.00
CL D:CYZ1302 0.0 0.3 1.0
C13 D:CYZ1302 1.8 0.3 1.0
C14 D:CYZ1302 2.7 0.3 1.0
C12 D:CYZ1302 2.8 0.3 1.0
OD1 D:ASP760 3.1 0.1 1.0
S2 D:CYZ1302 3.2 0.3 1.0
O4 D:CYZ1302 3.2 0.3 1.0
N3 D:CYZ1302 3.4 0.3 1.0
CB D:LEU759 3.9 0.2 1.0
C11 D:CYZ1302 4.0 0.3 1.0
C10 D:CYZ1302 4.0 0.3 1.0
CG D:ASP760 4.1 0.1 1.0
OG A:SER729 4.1 0.2 1.0
N D:ASP760 4.3 0.1 1.0
C D:LEU759 4.4 0.2 1.0
C9 D:CYZ1302 4.5 0.3 1.0
CB A:SER729 4.5 0.2 1.0
CD1 D:LEU759 4.6 0.2 1.0
CA D:ASP760 4.6 0.1 1.0
OD2 D:ASP760 4.6 0.1 1.0
O3 D:CYZ1302 4.7 0.3 1.0
O D:PHE495 4.7 0.6 1.0
O D:LEU759 4.8 0.2 1.0
CA D:LEU759 4.8 0.2 1.0
CG D:LEU759 4.9 0.2 1.0
CB D:ASP760 5.0 0.1 1.0

Reference:

E.C.Twomey, M.V.Yelshanskaya, A.A.Vassilevski, A.I.Sobolevsky. Mechanisms of Channel Block in Calcium-Permeable Ampa Receptors. Neuron V. 99 956 2018.
ISSN: ISSN 1097-4199
PubMed: 30122377
DOI: 10.1016/J.NEURON.2018.07.027
Page generated: Sat Jul 12 17:46:29 2025

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