Atomistry » Chlorine » PDB 6o9g-6ok0 » 6obg
Atomistry »
  Chlorine »
    PDB 6o9g-6ok0 »
      6obg »

Chlorine in PDB 6obg: Ricin A Chain Bound to Vhh Antibody V8E6

Enzymatic activity of Ricin A Chain Bound to Vhh Antibody V8E6

All present enzymatic activity of Ricin A Chain Bound to Vhh Antibody V8E6:
3.2.2.22;

Protein crystallography data

The structure of Ricin A Chain Bound to Vhh Antibody V8E6, PDB code: 6obg was solved by M.J.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.74 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.795, 77.885, 92.597, 90.00, 98.95, 90.00
R / Rfree (%) 18.9 / 21.8

Other elements in 6obg:

The structure of Ricin A Chain Bound to Vhh Antibody V8E6 also contains other interesting chemical elements:

Zinc (Zn) 9 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ricin A Chain Bound to Vhh Antibody V8E6 (pdb code 6obg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Ricin A Chain Bound to Vhh Antibody V8E6, PDB code: 6obg:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6obg

Go back to Chlorine Binding Sites List in 6obg
Chlorine binding site 1 out of 3 in the Ricin A Chain Bound to Vhh Antibody V8E6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ricin A Chain Bound to Vhh Antibody V8E6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:66.0
occ:1.00
O A:HOH407 2.2 49.9 1.0
O A:HOH534 2.2 57.7 1.0
N A:PHE108 3.0 44.1 1.0
CD2 A:TYR6 3.6 35.8 1.0
CA A:PHE108 3.8 45.7 1.0
CA A:LEU107 3.8 33.5 1.0
C A:LEU107 3.8 34.5 1.0
NE2 A:GLN5 4.0 91.3 1.0
O A:HIS106 4.0 41.4 1.0
CE2 A:TYR6 4.1 42.5 1.0
CD2 A:LEU107 4.3 34.4 1.0
CD1 A:LEU59 4.5 35.1 1.0
CD1 A:PHE108 4.5 35.8 1.0
N A:THR109 4.5 51.3 1.0
CB A:LEU107 4.7 33.7 1.0
C A:PHE108 4.8 42.2 1.0
CG A:TYR6 4.8 36.8 1.0
N A:LEU107 4.8 33.8 1.0
C A:HIS106 4.8 34.6 1.0
CG A:PHE108 4.8 35.0 1.0
CB A:PHE108 4.9 35.9 1.0
CD2 A:LEU59 4.9 35.9 1.0
CD A:GLN5 5.0 91.0 1.0
N A:TYR6 5.0 37.0 1.0

Chlorine binding site 2 out of 3 in 6obg

Go back to Chlorine Binding Sites List in 6obg
Chlorine binding site 2 out of 3 in the Ricin A Chain Bound to Vhh Antibody V8E6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ricin A Chain Bound to Vhh Antibody V8E6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:84.3
occ:1.00
ND1 A:HIS65 3.2 42.5 1.0
CG A:HIS65 3.6 45.4 1.0
CD A:GLU145 3.7 60.1 1.0
OE1 A:GLU145 3.7 82.2 1.0
CB A:HIS65 3.8 42.8 1.0
OE2 A:GLU145 3.8 62.8 1.0
CE1 A:HIS65 3.9 43.8 1.0
CG A:GLU145 4.3 55.2 1.0
CD2 A:HIS65 4.4 46.5 1.0
NE2 A:HIS65 4.5 51.6 1.0

Chlorine binding site 3 out of 3 in 6obg

Go back to Chlorine Binding Sites List in 6obg
Chlorine binding site 3 out of 3 in the Ricin A Chain Bound to Vhh Antibody V8E6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Ricin A Chain Bound to Vhh Antibody V8E6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:74.8
occ:1.00
O B:HOH482 2.2 57.0 1.0
O B:HOH416 2.4 76.5 1.0
NE2 B:HIS94 2.4 81.2 1.0
O B:HOH497 2.5 71.8 1.0
O B:HOH495 2.5 66.6 1.0
CE1 B:HIS94 3.0 76.1 1.0
CD2 B:HIS94 3.6 75.0 1.0
ND1 B:HIS94 4.2 80.7 1.0
O B:HOH493 4.4 57.1 1.0
CG B:HIS94 4.6 76.9 1.0

Reference:

M.J.Rudolph, M.J.Rudolph. N/A N/A.
Page generated: Sat Jul 12 17:47:28 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy