Atomistry » Chlorine » PDB 6o9g-6ok0 » 6ofd
Atomistry »
  Chlorine »
    PDB 6o9g-6ok0 »
      6ofd »

Chlorine in PDB 6ofd: The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase

Enzymatic activity of The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase

All present enzymatic activity of The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase:
3.1.3.2;

Protein crystallography data

The structure of The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase, PDB code: 6ofd was solved by D.Feder, G.Schenk, L.W.Guddat, W.M.Hussein, R.P.Mcgeary, M.W.Kan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.05 / 2.20
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 126.174, 126.174, 298.044, 90.00, 90.00, 120.00
R / Rfree (%) 15.5 / 19.9

Other elements in 6ofd:

The structure of The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase also contains other interesting chemical elements:

Zinc (Zn) 4 atoms
Iron (Fe) 4 atoms
Sodium (Na) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase (pdb code 6ofd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase, PDB code: 6ofd:

Chlorine binding site 1 out of 1 in 6ofd

Go back to Chlorine Binding Sites List in 6ofd
Chlorine binding site 1 out of 1 in the The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Octadecyloxy(Naphthalen-1-Yl)Methylphosphonic Acid in Complex with Red Kidney Bean Purple Acid Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl517

b:26.0
occ:1.00
O A:HOH756 3.0 24.3 1.0
NZ D:LYS306 3.0 20.2 1.0
O A:HOH658 3.1 21.8 1.0
N D:ARG258 3.2 21.2 1.0
CE D:LYS306 3.5 24.2 1.0
O A:GLU299 3.5 21.1 1.0
CA D:GLY257 3.7 21.7 1.0
CB D:ARG258 3.9 23.4 1.0
C D:GLY257 4.0 23.6 1.0
CE1 A:TYR253 4.0 18.3 1.0
O A:HOH776 4.1 22.5 1.0
CA D:ARG258 4.1 23.6 1.0
O4 D:SO4512 4.2 27.5 0.6
C A:GLU299 4.4 25.7 1.0
CB A:GLU299 4.4 26.0 1.0
CD1 A:TYR253 4.6 17.6 1.0
O D:ARG258 4.7 23.0 1.0
CA A:GLU299 4.7 25.2 1.0
OE1 A:GLU299 4.8 28.8 1.0
OG A:SER287 4.8 25.3 1.0
CG A:GLU299 4.9 28.6 1.0
CD D:LYS306 4.9 25.4 1.0
CZ A:TYR253 4.9 21.3 1.0
C D:ARG258 5.0 25.1 1.0
O A:SER252 5.0 20.9 1.0
OH A:TYR253 5.0 24.3 1.0

Reference:

D.Feder, M.W.Kan, W.M.Hussein, L.W.Guddat, G.Schenk, R.P.Mcgeary. Synthesis, Evaluation and Structural Investigations of Potent Purple Acid Phosphatase Inhibitors As Drug Leads For Osteoporosis. Eur.J.Med.Chem. V. 182 11611 2019.
ISSN: ISSN 0223-5234
PubMed: 31445230
DOI: 10.1016/J.EJMECH.2019.111611
Page generated: Sat Jul 12 17:49:26 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy