Chlorine in PDB 6om5: Structure of A Haemophore From Haemophilus Haemolyticus

The structure of Structure of A Haemophore From Haemophilus Haemolyticus, PDB code: 6om5 was solved by M.Torrado, J.L.Walshe, J.P.Mackay, J.M.Guss, D.A.Gell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.49 / 1.60
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	91.043, 91.043, 97.484, 90.00, 90.00, 120.00
R / Rfree (%)	17.1 / 18.4

The structure of Structure of A Haemophore From Haemophilus Haemolyticus also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Chlorine atom in the Structure of A Haemophore From Haemophilus Haemolyticus (pdb code 6om5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of A Haemophore From Haemophilus Haemolyticus, PDB code: 6om5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of A Haemophore From Haemophilus Haemolyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Haemophore From Haemophilus Haemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:53.8 occ:1.00 ND2 A:ASN185 3.2 35.9 1.0 NZ A:LYS95 3.5 53.6 1.0 CE A:LYS95 3.7 48.7 1.0 CG A:LYS98 3.7 46.2 1.0 CA A:ASP97 3.8 29.6 1.0 N A:LYS98 3.9 33.2 1.0 OD1 A:ASN185 3.9 31.1 1.0 CG A:ASN185 4.0 27.5 1.0 CD A:LYS95 4.1 45.1 1.0 CB A:ASP97 4.1 28.9 1.0 C A:ASP97 4.2 27.0 1.0 O A:HOH453 4.3 49.0 1.0 CD A:LYS98 4.3 52.9 1.0 CE A:LYS98 4.6 59.7 1.0 CB A:LYS98 4.6 40.0 1.0 O A:LYS96 4.7 33.8 1.0 CA A:LYS98 4.7 34.5 1.0

Chlorine binding site 2 out of 2 in the Structure of A Haemophore From Haemophilus Haemolyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Haemophore From Haemophilus Haemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl306 b:30.0 occ:1.00 FE A:HEM301 2.5 25.3 1.0 NB A:HEM301 3.0 26.8 1.0 NA A:HEM301 3.1 25.9 1.0 NH1 A:ARG82 3.2 33.8 1.0 NC A:HEM301 3.2 23.4 1.0 NE2 A:GLN74 3.2 26.4 1.0 ND A:HEM301 3.2 25.4 1.0 CD A:ARG82 3.6 34.2 1.0 CG A:GLN74 3.6 23.8 1.0 C4B A:HEM301 3.6 26.7 1.0 C1B A:HEM301 3.7 28.7 1.0 CD A:GLN74 3.8 24.6 1.0 C4A A:HEM301 3.8 30.5 1.0 C1C A:HEM301 3.9 23.7 1.0 C1A A:HEM301 3.9 28.1 1.0 C4D A:HEM301 3.9 26.9 1.0 C1D A:HEM301 4.0 24.3 1.0 CHC A:HEM301 4.0 25.8 1.0 C4C A:HEM301 4.0 23.3 1.0 CA A:MET79 4.1 24.4 1.0 N A:MET79 4.1 23.8 1.0 CHB A:HEM301 4.1 30.7 1.0 CG A:MET79 4.1 23.7 1.0 CZ A:ARG82 4.2 36.4 1.0 CHA A:HEM301 4.2 26.2 1.0 C A:LYS78 4.2 27.4 1.0 O A:LYS78 4.3 26.4 1.0 NE A:ARG82 4.3 35.1 1.0 CB A:LYS78 4.4 30.3 1.0 CHD A:HEM301 4.4 24.5 1.0 NE2 A:HIS119 4.5 23.0 1.0 C3B A:HEM301 4.6 28.7 1.0 C2B A:HEM301 4.6 29.5 1.0 CB A:MET79 4.7 25.0 1.0 CG A:ARG82 4.8 33.4 1.0 OE1 A:GLN74 4.8 24.6 1.0 C3A A:HEM301 4.9 32.4 1.0 CB A:ARG82 4.9 30.4 1.0 C2A A:HEM301 4.9 30.6 1.0 C2C A:HEM301 4.9 24.5 1.0 CB A:GLN74 4.9 23.8 1.0 CA A:LYS78 5.0 27.8 1.0

R.D.Latham, M.Torrado, B.Atto, J.L.Walshe, R.Wilson, J.M.Guss, J.P.Mackay, S.Tristram, D.A.Gell. A Heme-Binding Protein Produced By Haemophilus Haemolyticus Inhibits Non-Typeable Haemophilus Influenzae. Mol.Microbiol. 2019.
ISSN: ESSN 1365-2958
PubMed: 31742788
DOI: 10.1111/MMI.14426