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Chlorine in PDB 6p81: Structure of Dna Polymerase III, Beta Subunit/ Beta Sliding Clamp From Klebsiella Pneumoniae, Expressed with An N-Terminal His-SMT3 Fusion Tag, in Complex with Griselimycin

Protein crystallography data

The structure of Structure of Dna Polymerase III, Beta Subunit/ Beta Sliding Clamp From Klebsiella Pneumoniae, Expressed with An N-Terminal His-SMT3 Fusion Tag, in Complex with Griselimycin, PDB code: 6p81 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.01 / 1.75
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.020, 83.100, 188.180, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.3

Other elements in 6p81:

The structure of Structure of Dna Polymerase III, Beta Subunit/ Beta Sliding Clamp From Klebsiella Pneumoniae, Expressed with An N-Terminal His-SMT3 Fusion Tag, in Complex with Griselimycin also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Dna Polymerase III, Beta Subunit/ Beta Sliding Clamp From Klebsiella Pneumoniae, Expressed with An N-Terminal His-SMT3 Fusion Tag, in Complex with Griselimycin (pdb code 6p81). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Dna Polymerase III, Beta Subunit/ Beta Sliding Clamp From Klebsiella Pneumoniae, Expressed with An N-Terminal His-SMT3 Fusion Tag, in Complex with Griselimycin, PDB code: 6p81:

Chlorine binding site 1 out of 1 in 6p81

Go back to Chlorine Binding Sites List in 6p81
Chlorine binding site 1 out of 1 in the Structure of Dna Polymerase III, Beta Subunit/ Beta Sliding Clamp From Klebsiella Pneumoniae, Expressed with An N-Terminal His-SMT3 Fusion Tag, in Complex with Griselimycin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Dna Polymerase III, Beta Subunit/ Beta Sliding Clamp From Klebsiella Pneumoniae, Expressed with An N-Terminal His-SMT3 Fusion Tag, in Complex with Griselimycin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:28.8
occ:1.00
O A:HOH1259 3.1 22.6 1.0
ND2 A:ASN335 3.3 20.3 1.0
CB A:ALA353 3.8 31.5 1.0
CB A:ASN335 3.9 21.2 1.0
CG A:ASN335 4.1 21.9 1.0
N A:ASN335 4.4 20.4 1.0
CB A:GLU334 4.5 23.9 1.0
N A:ALA353 4.5 30.7 1.0
CA A:ALA353 4.7 29.0 1.0
CB A:ALA352 4.7 25.0 1.0
CA A:ASN335 4.7 21.0 1.0
O A:HOH1158 5.0 34.2 1.0
OD1 A:ASP351 5.0 26.4 1.0

Reference:

J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Structure of Dna Polymerase III, Beta Subunit/ Beta Sliding Clamp From Klebsiella Pneumoniae, Expressed with An N-Terminal His-SMT3 Fusion Tag, in Complex with Griselimycin To Be Published.
Page generated: Sat Jul 12 18:17:46 2025

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